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全球海洋病毒形态分析显示,区域差异极小,且无尾病毒占主导地位。

Global morphological analysis of marine viruses shows minimal regional variation and dominance of non-tailed viruses.

机构信息

Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA.

出版信息

ISME J. 2013 Sep;7(9):1738-51. doi: 10.1038/ismej.2013.67. Epub 2013 May 2.

Abstract

Viruses influence oceanic ecosystems by causing mortality of microorganisms, altering nutrient and organic matter flux via lysis and auxiliary metabolic gene expression and changing the trajectory of microbial evolution through horizontal gene transfer. Limited host range and differing genetic potential of individual virus types mean that investigations into the types of viruses that exist in the ocean and their spatial distribution throughout the world's oceans are critical to understanding the global impacts of marine viruses. Here we evaluate viral morphological characteristics (morphotype, capsid diameter and tail length) using a quantitative transmission electron microscopy (qTEM) method across six of the world's oceans and seas sampled through the Tara Oceans Expedition. Extensive experimental validation of the qTEM method shows that neither sample preservation nor preparation significantly alters natural viral morphological characteristics. The global sampling analysis demonstrated that morphological characteristics did not vary consistently with depth (surface versus deep chlorophyll maximum waters) or oceanic region. Instead, temperature, salinity and oxygen concentration, but not chlorophyll a concentration, were more explanatory in evaluating differences in viral assemblage morphological characteristics. Surprisingly, given that the majority of cultivated bacterial viruses are tailed, non-tailed viruses appear to numerically dominate the upper oceans as they comprised 51-92% of the viral particles observed. Together, these results document global marine viral morphological characteristics, show that their minimal variability is more explained by environmental conditions than geography and suggest that non-tailed viruses might represent the most ecologically important targets for future research.

摘要

病毒通过导致微生物死亡、通过裂解和辅助代谢基因表达改变营养物质和有机物通量以及通过水平基因转移改变微生物进化轨迹来影响海洋生态系统。有限的宿主范围和单个病毒类型的不同遗传潜力意味着,调查海洋中存在的病毒类型及其在世界海洋中的空间分布对于了解海洋病毒的全球影响至关重要。在这里,我们使用定量透射电子显微镜(qTEM)方法评估了六大洋的病毒形态特征(形态型、衣壳直径和尾长),这些样本是通过 Tara 海洋考察采集的。对 qTEM 方法的广泛实验验证表明,样本保存或制备都不会显著改变自然病毒的形态特征。全球采样分析表明,形态特征与深度(表层与深层叶绿素最大值水域)或海洋区域没有一致的变化。相反,温度、盐度和氧浓度,而不是叶绿素 a 浓度,在评估病毒组合形态特征的差异方面更具解释力。令人惊讶的是,鉴于大多数培养的细菌病毒都有尾巴,无尾病毒似乎在数量上占主导地位,因为它们占观察到的病毒粒子的 51-92%。这些结果共同记录了全球海洋病毒的形态特征,表明它们的最小可变性更多地由环境条件而不是地理位置来解释,并表明无尾病毒可能是未来研究的最具生态重要性的目标。

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