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利用目标循环连接、链置换和酶促扩增进行超灵敏单核苷酸多态性检测。

Ultrasensitive single-nucleotide polymorphism detection using target-recycled ligation, strand displacement and enzymatic amplification.

机构信息

School of Chemistry and Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds LS2 9JT, UK.

出版信息

Nanoscale. 2013 Jun 7;5(11):5027-35. doi: 10.1039/c3nr01010d. Epub 2013 May 2.

DOI:10.1039/c3nr01010d
PMID:23636707
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4576341/
Abstract

We report herein the development of a highly sensitive and selective approach for label-free DNA detection by combining target-recycled ligation (TRL), magnetic nanoparticle assisted target capture/separation, and efficient enzymatic amplification. We show that our approach can detect as little as 30 amol (600 fM in 50 μL) of unlabelled single-stranded DNA targets and offer an exquisitely high discrimination ratio (up to >380 fold with background correction) between a perfect-match cancer mutant and its single-base mismatch (wild-type) DNA target. Furthermore, it can quantitate the rare cancer mutant (KRAS codon 12) in a large excess of coexisting wild-type DNAs down to 0.75%. This sensor appears to be well-suited for sensitive SNP detection and a wide range of DNA mutation based diagnostic applications.

摘要

我们在此报告了一种通过结合目标循环连接(TRL)、磁性纳米粒子辅助目标捕获/分离和高效酶扩增,实现无标记 DNA 检测的高灵敏度和选择性方法。我们表明,我们的方法可以检测低至 30 飞摩尔(600 皮摩尔在 50 μL 中)的未标记单链 DNA 靶标,并在完美匹配的癌症突变体与其单碱基错配(野生型)DNA 靶标之间提供极高的区分率(背景校正后高达 >380 倍)。此外,它可以定量检测大量共存的野生型 DNA 中罕见的癌症突变体(KRAS 密码子 12),低至 0.75%。这种传感器似乎非常适合用于敏感 SNP 检测和广泛的基于 DNA 突变的诊断应用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7344/4576341/20b3fe31f3c3/c3nr01010d-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7344/4576341/08099b66a6e2/c3nr01010d-s1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7344/4576341/cf2ee5925ded/c3nr01010d-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7344/4576341/6c3b3aa5f1ac/c3nr01010d-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7344/4576341/acd7ef723317/c3nr01010d-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7344/4576341/ecff2682f74e/c3nr01010d-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7344/4576341/20b3fe31f3c3/c3nr01010d-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7344/4576341/08099b66a6e2/c3nr01010d-s1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7344/4576341/cf2ee5925ded/c3nr01010d-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7344/4576341/6c3b3aa5f1ac/c3nr01010d-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7344/4576341/acd7ef723317/c3nr01010d-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7344/4576341/ecff2682f74e/c3nr01010d-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7344/4576341/20b3fe31f3c3/c3nr01010d-f5.jpg

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