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遗传搭便车在异质空间选择压力下。

Genetic hitchhiking under heterogeneous spatial selection pressures.

机构信息

Department Fakultät Mathematik/Naturwissenschaften/Informatik, University of Applied Sciences Mittweida, Mittweida, Germany.

出版信息

PLoS One. 2013 Apr 24;8(4):e61742. doi: 10.1371/journal.pone.0061742. Print 2013.

Abstract

During adaptive evolutionary processes substantial heterogeneity in selective pressure might act across local habitats in sympatry. Examples are selection for drug resistance in malaria or herbicide resistance in weeds. In such setups standard population-genetic assumptions (homogeneous constant selection pressures, random mating etc.) are likely to be violated. To avoid misinferences on the strength and pattern of natural selection it is therefore necessary to adjust population-genetic theory to meet the specifics driving adaptive processes in particular organisms. We introduce a deterministic model in which selection acts heterogeneously on a population of haploid individuals across different patches over which the population randomly disperses every generation. A fixed proportion of individuals mates exclusively within patches, whereas the rest mates randomly across all patches. We study how the allele frequencies at neutral markers are affected by the spread of a beneficial mutation at a closely linked locus (genetic hitchhiking). We provide an analytical solution for the frequency change and the expected heterozygosity at the neutral locus after a single copy of a beneficial mutation became fixed. We furthermore provide approximations of these solutions which allow for more obvious interpretations. In addition, we validate the results by stochastic simulations. Our results show that the application of standard population-genetic theory is accurate as long as differences across selective environments are moderate. However, if selective differences are substantial, as for drug resistance in malaria, herbicide resistance in weeds, or insecticide resistance in agriculture, it is necessary to adapt available theory to the specifics of particular organisms.

摘要

在适应性进化过程中,选择压力可能会在同域的局部栖息地中产生实质性的异质性。例如,疟疾中的耐药性选择或杂草中的除草剂抗性选择就是例子。在这种情况下,标准的群体遗传学假设(均匀的恒定选择压力、随机交配等)可能会被违反。为了避免对自然选择的强度和模式产生误解,因此有必要调整群体遗传学理论以适应特定生物体的适应性过程的具体情况。我们引入了一个确定性模型,其中选择在不同斑块上的单倍体个体的种群中表现出异质性,而种群在每一代中随机扩散。一部分个体在斑块内进行排他性交配,而其余个体则在所有斑块中随机交配。我们研究了在紧密连锁的基因座上的有益突变传播时,中性标记的等位基因频率如何受到影响(遗传搭便车)。我们提供了一个关于中性基因座上频率变化和预期杂合度的解析解,在有益突变的一个拷贝固定后。此外,我们还提供了这些解决方案的近似值,以使其更易于解释。此外,我们通过随机模拟验证了结果。我们的结果表明,只要选择环境之间的差异适中,标准的群体遗传学理论的应用是准确的。然而,如果选择差异很大,如疟疾中的耐药性、杂草中的除草剂抗性或农业中的杀虫剂抗性,就有必要使现有理论适应特定生物体的具体情况。

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