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植物乳杆菌单宁酶的晶体结构。

Crystal structure of tannase from Lactobacillus plantarum.

机构信息

Materials Science and Engineering, CSIRO, 343 Royal Parade, Parkville, VIC 3052, Australia.

出版信息

J Mol Biol. 2013 Aug 9;425(15):2737-51. doi: 10.1016/j.jmb.2013.04.032. Epub 2013 May 3.

Abstract

Tannins are water-soluble polyphenolic compounds in plants. Hydrolyzable tannins are derivatives of gallic acid (3,4,5-trihydroxybenzoic acid) or its meta-depsidic forms that are esterified to polyol, catechin, or triterpenoid units. Tannases are a family of esterases that catalyze the hydrolysis of the galloyl ester bond in hydrolyzable tannins to release gallic acid. The enzymes have found wide applications in food, feed, beverage, pharmaceutical, and chemical industries since their discovery more than a century ago, although little is known about them at the molecular level, including the details of the catalytic and substrate binding sites. Here, we report the first three-dimensional structure of a tannase from Lactobacillus plantarum. The enzyme displays an α/β structure, featured by a large cap domain inserted into the classical serine hydrolase fold. A catalytic triad was identified in the structure, which is composed of Ser163, His451, and Asp419. During the binding of gallic acid, the carboxyl group of the molecule forges hydrogen-bonding interactions with the catalytic triad of the enzyme while the three hydroxyl groups make contacts with Asp421, Lys343, and Glu357 to form another hydrogen-bonding network. Mutagenesis studies demonstrated that these residues are indispensable for the activity of the enzyme. Structural studies of the enzyme in complex with a number of substrates indicated that the interactions at the galloyl binding site are the determinant force for the binding of substrates. The single galloyl binding site is responsible for the esterase and depsidase activities of the enzyme.

摘要

单宁是植物中水溶性的多酚化合物。可水解单宁是没食子酸(3,4,5-三羟基苯甲酸)或其间位二酯形式的衍生物,与多元醇、儿茶素或三萜单元酯化。单宁酶是酯酶家族,可催化可水解单宁中没食子酰酯键的水解,释放没食子酸。自一个多世纪前发现以来,这些酶在食品、饲料、饮料、制药和化学工业中得到了广泛的应用,尽管在分子水平上对它们知之甚少,包括催化和底物结合位点的细节。在这里,我们报道了来自植物乳杆菌的第一种单宁酶的三维结构。该酶呈现α/β结构,其特征是插入到经典丝氨酸水解酶折叠中的大帽结构域。在结构中鉴定出一个催化三联体,由 Ser163、His451 和 Asp419 组成。在没食子酸结合过程中,分子的羧基与酶的催化三联体形成氢键相互作用,而三个羟基与 Asp421、Lys343 和 Glu357 接触,形成另一个氢键网络。突变研究表明,这些残基对酶的活性是不可或缺的。对该酶与多种底物复合物的结构研究表明,在没食子酰结合位点的相互作用是决定底物结合的决定因素。单一的没食子酰结合位点负责酶的酯酶和去酯酶活性。

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