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酶促解毒、构象选择和无定形活性部位的作用。

Enzymatic detoxication, conformational selection, and the role of molten globule active sites.

机构信息

Department of Medicinal Chemistry, University of Washington, Seattle, Washington 98195-7610, USA.

出版信息

J Biol Chem. 2013 Jun 21;288(25):18599-611. doi: 10.1074/jbc.M112.445767. Epub 2013 May 6.

Abstract

The role of conformational ensembles in enzymatic reactions remains unclear. Discussion concerning "induced fit" versus "conformational selection" has, however, ignored detoxication enzymes, which exhibit catalytic promiscuity. These enzymes dominate drug metabolism and determine drug-drug interactions. The detoxication enzyme glutathione transferase A1-1 (GSTA1-1), exploits a molten globule-like active site to achieve remarkable catalytic promiscuity wherein the substrate-free conformational ensemble is broad with barrierless transitions between states. A quantitative index of catalytic promiscuity is used to compare engineered variants of GSTA1-1 and the catalytic promiscuity correlates strongly with characteristics of the thermodynamic partition function, for the substrate-free enzymes. Access to chemically disparate transition states is encoded by the substrate-free conformational ensemble. Pre-steady state catalytic data confirm an extension of the conformational selection model, wherein different substrates select different starting conformations. The kinetic liability of the conformational breadth is minimized by a smooth landscape. We propose that "local" molten globule behavior optimizes detoxication enzymes.

摘要

构象平衡在酶反应中的作用仍不清楚。然而,关于“诱导契合”与“构象选择”的讨论忽略了具有催化混杂性的解毒酶。这些酶主导着药物代谢,并决定着药物相互作用。解毒酶谷胱甘肽转移酶 A1-1(GSTA1-1)利用类似无规卷曲的活性位点实现显著的催化混杂性,其中无底物构象平衡态较宽,状态之间的转变无势垒。使用催化混杂性的定量指标比较 GSTA1-1 的工程变体,发现对于无底物的酶,催化混杂性与热力学分区函数的特征强烈相关。通过无底物构象平衡态来编码对化学差异过渡态的访问。预稳态催化数据证实了构象选择模型的扩展,其中不同的底物选择不同的起始构象。通过平滑的地貌,最小化了构象宽度的动力学缺陷。我们提出“局部”无规卷曲行为优化了解毒酶。

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