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二醇调节甘氨酸核糖开关的终止子茎稳定性和配体依赖性。

Glycols modulate terminator stem stability and ligand-dependency of a glycine riboswitch.

作者信息

Hamachi Kokoro, Hayashi Hikari, Shimamura Miyuki, Yamaji Yuiha, Kaneko Ai, Fujisawa Aruma, Umehara Takuya, Tamura Koji

机构信息

Department of Biological Science and Technology, Tokyo University of Science, 6-3-1 Niijuku, Katsushika-ku, Tokyo 125-8585, Japan.

出版信息

Biosystems. 2013 Aug;113(2):59-65. doi: 10.1016/j.biosystems.2013.05.004. Epub 2013 May 27.

Abstract

The Bacillus subtilis glycine riboswitch comprises tandem glycine-binding aptamers and a putative terminator stem followed by the gcvT operon. Gene expression is regulated via the sensing of glycine. However, we found that the riboswitch behaves in a "glycine-independent" manner in the presence of polyethylene glycol (PEG) and ethylene glycol. The effect is related to the formation of a terminator stem within the expression platform under such conditions. The results revealed that increasing PEG stabilized the structure of the terminator stem. By contrast, the addition of ethylene glycol destabilized the terminator stem. PEG and ethylene glycol have opposite effects on transcription as well as on stable terminator stem formation. The glycine-independency of the riboswitch and the effects of such glycols might shed light on the evolution of riboswitches.

摘要

枯草芽孢杆菌甘氨酸核糖开关由串联的甘氨酸结合适体和一个推定的终止子茎组成,其后是gcvT操纵子。基因表达通过对甘氨酸的感应进行调控。然而,我们发现,在聚乙二醇(PEG)和乙二醇存在的情况下,核糖开关以一种“不依赖甘氨酸”的方式发挥作用。这种效应与在这种条件下表达平台内终止子茎的形成有关。结果表明,增加PEG可稳定终止子茎的结构。相比之下,添加乙二醇会使终止子茎不稳定。PEG和乙二醇对转录以及稳定终止子茎的形成具有相反的作用。核糖开关的不依赖甘氨酸特性以及此类二醇的作用可能会为核糖开关的进化提供线索。

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