多环芳烃降解细菌南海海杆菌菌株D15-8WT的基因组序列
Genome Sequence of the Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Strain Marinobacter nanhaiticus D15-8WT.
作者信息
Cui Zhisong, Gao Wei, Li Qian, Xu Guangsu, Zheng Li
机构信息
Marine Ecology Research Center, the First Institute of Oceanography, State Oceanic Administration of China, Qingdao, China.
出版信息
Genome Announc. 2013 May 30;1(3):e00301-13. doi: 10.1128/genomeA.00301-13.
Abstract
Marinobacter nanhaiticus strain D15-8W(T) was isolated from a phenanthrene-degrading consortium, enriched from sediment of the South China Sea. Here, we present the draft genome of strain D15-8W(T), which contains 5,358,309 bp with a G+C content of 58.53% and contains 4,829 protein-coding genes and 47 tRNA genes.
摘要
南海海杆菌菌株D15-8W(T)是从一个菲降解菌群中分离得到的，该菌群从中国南海的沉积物中富集而来。在此，我们展示了菌株D15-8W(T)的基因组草图，其包含5,358,309 bp，G+C含量为58.53%，含有4,829个蛋白质编码基因和47个tRNA基因。
相似文献
1
Genome Sequence of the Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Strain Marinobacter nanhaiticus D15-8WT.多环芳烃降解细菌南海海杆菌菌株D15-8WT的基因组序列
Genome Announc. 2013 May 30;1(3):e00301-13. doi: 10.1128/genomeA.00301-13.
2
Marinobacter nanhaiticus sp. nov., polycyclic aromatic hydrocarbon-degrading bacterium isolated from the sediment of the South China Sea.南海水域沉积物中多环芳烃降解菌 Marinobacter nanhaiticus sp. nov. 的分离与鉴定
Antonie Van Leeuwenhoek. 2013 Mar;103(3):485-91. doi: 10.1007/s10482-012-9830-z. Epub 2012 Nov 2.
3
Complete genome sequence of PETase type IIa-harboring D15-8W, isolated from a South China Sea sediment.从中国南海沉积物中分离出的携带IIa型PET酶的D15-8W的全基因组序列。
Microbiol Resour Announc. 2023 Dec 14;12(12):e0086823. doi: 10.1128/MRA.00868-23. Epub 2023 Nov 9.
4
Marinobacter aromaticivorans sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium isolated from sea sediment.芳香食烷菌新种（Marinobacter aromaticivorans sp. nov.），一种从海洋沉积物中分离出的多环芳烃降解细菌。
Int J Syst Evol Microbiol. 2016 Jan;66(1):353-359. doi: 10.1099/ijsem.0.000722. Epub 2015 Oct 29.
5
Draft Genome Sequence of Marinomonas sp. Strain D104, a Polycyclic Aromatic Hydrocarbon-Degrading Bacterium from the Deep-Sea Sediment of the Arctic Ocean.北冰洋深海沉积物中多环芳烃降解细菌海单胞菌属菌株D104的基因组草图序列
Genome Announc. 2014 Jan 23;2(1):e01211-13. doi: 10.1128/genomeA.01211-13.
6
Draft Genome Sequence of Sphingobium sp. Strain C100, a Polycyclic Aromatic Hydrocarbon-Degrading Bacterium from the Deep-Sea Sediment of the Arctic Ocean.鞘氨醇单胞菌属菌株C100的基因组草图序列，一种来自北冰洋深海沉积物的多环芳烃降解细菌。
Genome Announc. 2014 Jan 30;2(1):e01210-13. doi: 10.1128/genomeA.01210-13.
7
Genome Sequence of the Pyrene- and Fluoranthene-Degrading Bacterium Cycloclasticus sp. Strain PY97M.芘和荧蒽降解菌环裂菌属菌株PY97M的基因组序列
Genome Announc. 2013 Aug 1;1(4):e00536-13. doi: 10.1128/genomeA.00536-13.
8
Genome Sequence of the Petroleum Hydrocarbon-Degrading Bacterium Alcanivorax sp. Strain 97CO-5.石油烃降解细菌食烷菌属菌株97CO-5的基因组序列
Genome Announc. 2014 Dec 11;2(6):e01277-14. doi: 10.1128/genomeA.01277-14.
9
sp. nov., a halophilic bacterium isolated from sediment of a salt flat.sp. nov.，一种从盐滩沉积物中分离出的嗜盐细菌。
Int J Syst Evol Microbiol. 2020 Dec;70(12):6294-6300. doi: 10.1099/ijsem.0.004530.
10
Draft genome sequence of Mycobacterium rufum JS14(T), a polycyclic-aromatic-hydrocarbon-degrading bacterium from petroleum-contaminated soil in Hawaii.来自夏威夷石油污染土壤的多环芳烃降解细菌红分枝杆菌JS14(T)的基因组序列草图
Stand Genomic Sci. 2016 Aug 2;11:47. doi: 10.1186/s40793-016-0167-5. eCollection 2016.
引用本文的文献
1
Complete genome sequence of PETase type IIa-harboring D15-8W, isolated from a South China Sea sediment.从中国南海沉积物中分离出的携带IIa型PET酶的D15-8W的全基因组序列。
Microbiol Resour Announc. 2023 Dec 14;12(12):e0086823. doi: 10.1128/MRA.00868-23. Epub 2023 Nov 9.
2
Complete Genome Sequence of Marinobacter sp. CP1, Isolated from a Self-Regenerating Biocathode Biofilm.从自再生生物阴极生物膜中分离出的海杆菌属CP1菌株的全基因组序列
Genome Announc. 2015 Sep 24;3(5):e01103-15. doi: 10.1128/genomeA.01103-15.
3
Substrates specialization in lipid compounds and hydrocarbons of Marinobacter genus.海洋杆菌属的脂类化合物和碳氢化合物的底物专化性。
Environ Sci Pollut Res Int. 2015 Oct;22(20):15347-59. doi: 10.1007/s11356-014-4009-y. Epub 2015 Jan 6.
4
Genome Sequence of "Thalassospira australica" NP3b2T Isolated from St. Kilda Beach, Tasman Sea.从塔斯曼海圣基尔达海滩分离出的“澳大利亚海螺旋菌”NP3b2T的基因组序列
Genome Announc. 2014 Nov 13;2(6):e01139-14. doi: 10.1128/genomeA.01139-14.
5
Draft Genome Sequences of Marinobacter similis A3d10T and Marinobacter salarius R9SW1T.相似海杆菌A3d10T和盐海杆菌R9SW1T的基因组序列草图
Genome Announc. 2014 May 22;2(3):e00442-14. doi: 10.1128/genomeA.00442-14.
6
Draft Genome Sequence of Advenella kashmirensis Strain W13003, a Polycyclic Aromatic Hydrocarbon-Degrading Bacterium.多环芳烃降解细菌克什米尔阿德韦内拉菌W13003菌株的基因组序列草图
Genome Announc. 2014 Jan 30;2(1):e00003-14. doi: 10.1128/genomeA.00003-14.
本文引用的文献
1
Marinobacter nanhaiticus sp. nov., polycyclic aromatic hydrocarbon-degrading bacterium isolated from the sediment of the South China Sea.南海水域沉积物中多环芳烃降解菌 Marinobacter nanhaiticus sp. nov. 的分离与鉴定
Antonie Van Leeuwenhoek. 2013 Mar;103(3):485-91. doi: 10.1007/s10482-012-9830-z. Epub 2012 Nov 2.
2
De novo assembly of human genomes with massively parallel short read sequencing.利用大规模平行短读测序进行人类基因组从头组装。
Genome Res. 2010 Feb;20(2):265-72. doi: 10.1101/gr.097261.109. Epub 2009 Dec 17.
3
SOAP: short oligonucleotide alignment program.SOAP：短寡核苷酸比对程序。
Bioinformatics. 2008 Mar 1;24(5):713-4. doi: 10.1093/bioinformatics/btn025. Epub 2008 Jan 28.
4
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.RNAmmer：核糖体RNA基因的一致性快速注释
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
5
Marinobacter algicola sp. nov., isolated from laboratory cultures of paralytic shellfish toxin-producing dinoflagellates.嗜藻海杆菌新种，从产麻痹性贝类毒素的甲藻实验室培养物中分离得到。
Int J Syst Evol Microbiol. 2006 Mar;56(Pt 3):523-527. doi: 10.1099/ijs.0.63447-0.
6
Marinobacter maritimus sp. nov., a psychrotolerant strain isolated from sea water off the subantarctic Kerguelen islands.海栖海杆菌新种，一种从亚南极凯尔盖朗群岛附近海水中分离出的耐冷菌株。
Int J Syst Evol Microbiol. 2005 Jul;55(Pt 4):1453-1456. doi: 10.1099/ijs.0.63478-0.
7
Marinobacter hydrocarbonoclasticus Gauthier et al. 1992 and Marinobacter aquaeolei Nguyen et al. 1999 are heterotypic synonyms.
Int J Syst Evol Microbiol. 2005 May;55(Pt 3):1349-1351. doi: 10.1099/ijs.0.63591-0.
8
Marinobacter aquaeolei sp. nov., a halophilic bacterium isolated from a Vietnamese oil-producing well.水生油海杆菌新种，一种从越南产油井中分离出的嗜盐细菌。
Int J Syst Bacteriol. 1999 Apr;49 Pt 2:367-75. doi: 10.1099/00207713-49-2-367.
9
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.tRNAscan-SE：用于改进基因组序列中转运RNA基因检测的程序。
Nucleic Acids Res. 1997 Mar 1;25(5):955-64. doi: 10.1093/nar/25.5.955.
10
Marinobacter hydrocarbonoclasticus gen. nov., sp. nov., a new, extremely halotolerant, hydrocarbon-degrading marine bacterium.嗜烃海杆菌属新属，新种，一种新型的、极端耐盐、可降解烃类的海洋细菌。
Int J Syst Bacteriol. 1992 Oct;42(4):568-76. doi: 10.1099/00207713-42-4-568.
Zotero 插件