• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

关于先天免疫系统的计算建模。

On the computational modeling of the innate immune system.

机构信息

Universidade Federal de Juiz de Fora, Campus Universitário, Bairro São Pedro, Rua José Lourenço Kelmer s/n, Juiz de Fora, MG, Brazil.

出版信息

BMC Bioinformatics. 2013;14 Suppl 6(Suppl 6):S7. doi: 10.1186/1471-2105-14-S6-S7. Epub 2013 Apr 17.

DOI:10.1186/1471-2105-14-S6-S7
PMID:23734602
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3633047/
Abstract

In recent years, there has been an increasing interest in the mathematical and computational modeling of the human immune system (HIS). Computational models of HIS dynamics may contribute to a better understanding of the relationship between complex phenomena and immune response; in addition, computational models will support the development of new drugs and therapies for different diseases. However, modeling the HIS is an extremely difficult task that demands a huge amount of work to be performed by multidisciplinary teams. In this study, our objective is to model the spatio-temporal dynamics of representative cells and molecules of the HIS during an immune response after the injection of lipopolysaccharide (LPS) into a section of tissue. LPS constitutes the cellular wall of Gram-negative bacteria, and it is a highly immunogenic molecule, which means that it has a remarkable capacity to elicit strong immune responses. We present a descriptive, mechanistic and deterministic model that is based on partial differential equations (PDE). Therefore, this model enables the understanding of how the different complex phenomena interact with structures and elements during an immune response. In addition, the model's parameters reflect physiological features of the system, which makes the model appropriate for general use.

摘要

近年来,人们对人类免疫系统 (HIS) 的数学和计算建模越来越感兴趣。HIS 动力学的计算模型可能有助于更好地理解复杂现象与免疫反应之间的关系;此外,计算模型将支持针对不同疾病的新药和疗法的开发。然而,对 HIS 进行建模是一项极其困难的任务,需要多学科团队付出大量的工作。在这项研究中,我们的目标是在 LPS 注入组织的一段后,对免疫反应期间 HIS 的代表性细胞和分子的时空动态进行建模。LPS 构成革兰氏阴性菌的细胞壁,它是一种高度免疫原性的分子,这意味着它具有引起强烈免疫反应的显著能力。我们提出了一个基于偏微分方程 (PDE) 的描述性、机械性和确定性模型。因此,该模型使我们能够了解在免疫反应过程中不同复杂现象如何与结构和元素相互作用。此外,模型的参数反映了系统的生理特征,这使得模型适合于通用用途。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/fd231ca3b706/1471-2105-14-S6-S7-17.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/27a9a80e143c/1471-2105-14-S6-S7-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/42cb99e4d4ae/1471-2105-14-S6-S7-2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/09fe752c95de/1471-2105-14-S6-S7-3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/203cb61a06ed/1471-2105-14-S6-S7-4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/19a273e63de8/1471-2105-14-S6-S7-5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/31a5322010d5/1471-2105-14-S6-S7-6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/3847f2450fdc/1471-2105-14-S6-S7-7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/21c72c7f7676/1471-2105-14-S6-S7-8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/6382147e9fd7/1471-2105-14-S6-S7-9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/77a53618818b/1471-2105-14-S6-S7-10.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/b8b865598b92/1471-2105-14-S6-S7-11.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/0072b3dd6a19/1471-2105-14-S6-S7-12.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/bd2baedaeb99/1471-2105-14-S6-S7-13.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/4f4e85d5c9b8/1471-2105-14-S6-S7-14.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/5c784a36dbd4/1471-2105-14-S6-S7-15.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/d071ea3a9e0d/1471-2105-14-S6-S7-16.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/fd231ca3b706/1471-2105-14-S6-S7-17.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/27a9a80e143c/1471-2105-14-S6-S7-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/42cb99e4d4ae/1471-2105-14-S6-S7-2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/09fe752c95de/1471-2105-14-S6-S7-3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/203cb61a06ed/1471-2105-14-S6-S7-4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/19a273e63de8/1471-2105-14-S6-S7-5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/31a5322010d5/1471-2105-14-S6-S7-6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/3847f2450fdc/1471-2105-14-S6-S7-7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/21c72c7f7676/1471-2105-14-S6-S7-8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/6382147e9fd7/1471-2105-14-S6-S7-9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/77a53618818b/1471-2105-14-S6-S7-10.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/b8b865598b92/1471-2105-14-S6-S7-11.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/0072b3dd6a19/1471-2105-14-S6-S7-12.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/bd2baedaeb99/1471-2105-14-S6-S7-13.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/4f4e85d5c9b8/1471-2105-14-S6-S7-14.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/5c784a36dbd4/1471-2105-14-S6-S7-15.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/d071ea3a9e0d/1471-2105-14-S6-S7-16.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f7e/3633047/fd231ca3b706/1471-2105-14-S6-S7-17.jpg

相似文献

1
On the computational modeling of the innate immune system.关于先天免疫系统的计算建模。
BMC Bioinformatics. 2013;14 Suppl 6(Suppl 6):S7. doi: 10.1186/1471-2105-14-S6-S7. Epub 2013 Apr 17.
2
Initial responses to endotoxins and Gram-negative bacteria.对内毒素和革兰氏阴性菌的初始反应。
Clin Chim Acta. 2002 Sep;323(1-2):59-72. doi: 10.1016/s0009-8981(02)00180-8.
3
Outer Membrane Lipid Secretion and the Innate Immune Response to Gram-Negative Bacteria.外膜脂质分泌与革兰氏阴性菌的固有免疫反应。
Infect Immun. 2020 Jun 22;88(7). doi: 10.1128/IAI.00920-19.
4
Role of lipopolysaccharide susceptibility in the innate immune response to Salmonella typhimurium infection: LPS, a primary target for recognition of Gram-negative bacteria.脂多糖易感性在鼠伤寒沙门氏菌感染固有免疫反应中的作用:脂多糖是识别革兰氏阴性菌的主要靶点。
Microbes Infect. 2001 Nov-Dec;3(14-15):1213-22. doi: 10.1016/s1286-4579(01)01481-2.
5
Modeling the Bistable Dynamics of the Innate Immune System.先天免疫系统的双稳态动力学建模。
Bull Math Biol. 2019 Jan;81(1):256-276. doi: 10.1007/s11538-018-0527-y. Epub 2018 Nov 1.
6
The Characteristics and Function of Bacterial Lipopolysaccharides and Their Endotoxic Potential in Humans.细菌脂多糖的特性、功能及其在人体内的内毒素潜力
Int Rev Immunol. 2016 May 3;35(3):189-218. doi: 10.3109/08830185.2015.1087518. Epub 2015 Nov 25.
7
Caspase-11 non-canonical inflammasome: a critical sensor of intracellular lipopolysaccharide in macrophage-mediated inflammatory responses.半胱天冬酶-11非经典炎性小体:巨噬细胞介导的炎症反应中细胞内脂多糖的关键传感器。
Immunology. 2017 Oct;152(2):207-217. doi: 10.1111/imm.12787. Epub 2017 Jul 31.
8
A methodological approach for using high-level Petri Nets to model the immune system response.一种使用高级Petri网对免疫系统反应进行建模的方法。
BMC Bioinformatics. 2016 Dec 22;17(Suppl 19):498. doi: 10.1186/s12859-016-1361-6.
9
Lipopolysaccharide structures of Gram-negative populations in the gut microbiota and effects on host interactions.肠道微生物群中革兰氏阴性菌的脂多糖结构及其对宿主相互作用的影响。
FEMS Microbiol Rev. 2019 May 1;43(3):257-272. doi: 10.1093/femsre/fuz002.
10
MD-2 enables Toll-like receptor 2 (TLR2)-mediated responses to lipopolysaccharide and enhances TLR2-mediated responses to Gram-positive and Gram-negative bacteria and their cell wall components.髓样分化蛋白2(MD-2)可使Toll样受体2(TLR2)介导对脂多糖的反应,并增强TLR2介导对革兰氏阳性菌和革兰氏阴性菌及其细胞壁成分的反应。
J Immunol. 2001 Feb 1;166(3):1938-44. doi: 10.4049/jimmunol.166.3.1938.

引用本文的文献

1
Multi-physiology modeling of the immune system in the era of precision immunotherapy.精准免疫治疗时代免疫系统的多生理学建模
Front Immunol. 2025 May 29;16:1548768. doi: 10.3389/fimmu.2025.1548768. eCollection 2025.
2
Coupled simultaneous analysis of vaccine and self-awareness strategies on evolutionary dilemma aspect with various immunity.结合疫苗和自我意识策略在进化困境方面与各种免疫力的同步分析。
Heliyon. 2023 Mar 9;9(3):e14355. doi: 10.1016/j.heliyon.2023.e14355. eCollection 2023 Mar.
3
Embracing complexity in sepsis.脓毒症中的复杂性。

本文引用的文献

1
Tumor-infiltrating neutrophils in pancreatic neoplasia.胰腺肿瘤中的肿瘤浸润中性粒细胞。
Mod Pathol. 2011 Dec;24(12):1612-9. doi: 10.1038/modpathol.2011.113. Epub 2011 Aug 5.
2
Do neutrophils play a role in establishing liver abscesses and distant metastases caused by Klebsiella pneumoniae?中性粒细胞在肺炎克雷伯菌引起的肝脓肿和远处转移中起作用吗?
PLoS One. 2010 Nov 30;5(11):e15005. doi: 10.1371/journal.pone.0015005.
3
Listeria myocarditis with an atypical intracavitary vegetation/thrombus.伴有非典型心腔内赘生物/血栓的李斯特菌性心肌炎。
Crit Care. 2023 Mar 11;27(1):102. doi: 10.1186/s13054-023-04374-0.
4
Neutrophil crosstalk during cardiac wound healing after myocardial infarction.心肌梗死后心脏伤口愈合过程中的中性粒细胞相互作用。
Curr Opin Physiol. 2021 Dec;24. doi: 10.1016/j.cophys.2022.100485. Epub 2022 Jan 31.
5
A Mathematical Model of the Dynamics of Cytokine Expression and Human Immune Cell Activation in Response to the Pathogen .一种针对病原体的细胞因子表达和人类免疫细胞激活动力学的数学模型。
Front Cell Infect Microbiol. 2021 Nov 10;11:711153. doi: 10.3389/fcimb.2021.711153. eCollection 2021.
6
Computational Studies of the Intestinal Host-Microbiota Interactome.肠道宿主-微生物群相互作用组的计算研究
Computation (Basel). 2015 Mar;3(1):2-28. doi: 10.3390/computation3010002. Epub 2015 Jan 14.
7
Dynamical analysis of SEIS model with nonlinear innate immunity and saturated treatment.具有非线性先天免疫和饱和治疗的SEIS模型的动力学分析
Eur Phys J Plus. 2021;136(9):952. doi: 10.1140/epjp/s13360-021-01944-5. Epub 2021 Sep 17.
8
A Validated Mathematical Model of the Cytokine Release Syndrome in Severe COVID-19.一种经验证的重症 COVID-19 细胞因子释放综合征数学模型。
Front Mol Biosci. 2021 Jul 20;8:639423. doi: 10.3389/fmolb.2021.639423. eCollection 2021.
9
Dynamic analysis of the role of innate immunity in SEIS epidemic model.先天免疫在SEIS流行病模型中的作用的动态分析
Eur Phys J Plus. 2021;136(4):439. doi: 10.1140/epjp/s13360-021-01390-3. Epub 2021 Apr 23.
10
Current and prospective computational approaches and challenges for developing COVID-19 vaccines.开发 COVID-19 疫苗的当前和未来计算方法及挑战。
Adv Drug Deliv Rev. 2021 May;172:249-274. doi: 10.1016/j.addr.2021.02.004. Epub 2021 Feb 6.
Heart. 2010 Oct;96(20):1637. doi: 10.1136/hrt.2010.203679.
4
Neutrophils launch monocyte extravasation by release of granule proteins.中性粒细胞通过释放颗粒蛋白引发单核细胞渗出。
Thromb Haemost. 2009 Aug;102(2):198-205. doi: 10.1160/TH08-11-0720.
5
Neutrophil apoptosis and the resolution of infection.中性粒细胞凋亡与感染的消退
Immunol Res. 2009;43(1-3):25-61. doi: 10.1007/s12026-008-8049-6.
6
The Hill equation: a review of its capabilities in pharmacological modelling.希尔方程:对其在药理建模中作用的综述
Fundam Clin Pharmacol. 2008 Dec;22(6):633-48. doi: 10.1111/j.1472-8206.2008.00633.x.
7
Regulation by anti-inflammatory cytokines (IL-4, IL-10, IL-13, TGFbeta)of interleukin-8 production by LPS- and/ or TNFalpha-activated human polymorphonuclear cells.抗炎细胞因子(IL-4、IL-10、IL-13、TGFβ)对 LPS 和/或 TNFα 激活的人多形核细胞产生的白细胞介素-8 的调节作用。
Mediators Inflamm. 1996;5(5):334-40. doi: 10.1155/S0962935196000488.
8
The HIV-positive skin biopsy.HIV 阳性的皮肤活检。
J Clin Pathol. 2008 Jul;61(7):802-17. doi: 10.1136/jcp.2007.054015. Epub 2007 Nov 15.
9
Requirements for apoptotic cell contact in regulation of macrophage responses.巨噬细胞反应调节中凋亡细胞接触的要求。
J Immunol. 2006 Sep 15;177(6):4047-54. doi: 10.4049/jimmunol.177.6.4047.
10
In silico models of acute inflammation in animals.动物急性炎症的计算机模拟模型。
Shock. 2006 Sep;26(3):235-44. doi: 10.1097/01.shk.0000225413.13866.fo.