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Mathematica 程序:使用该程序通过储库模型模拟代谢不可逆途径和途径中第一个酶被其终产物抑制的情况。

Mathematica program: its use to simulate metabolic irreversible pathways and inhibition of the first enzyme of a pathway by its end product as visualized with the reservoir model.

机构信息

Departamento de Bioquímica, Facultad de Medicina, Instituto de Investigaciones Biomédicas Alberto Sols UAM/CSIC, Arzobispo Morcillo, 4, Madrid, 28029, Spain.

出版信息

Comput Biol Med. 2013 Aug 1;43(7):853-64. doi: 10.1016/j.compbiomed.2013.04.003. Epub 2013 Apr 18.

Abstract

The main objective of this report is to show the usefulness and versatility of the Mathematica program to simulate enzyme linear pathways and to depict the effect of changing the Vmax and/or Km values of one or more enzymes on the course of the reaction. In addition, analysis of the different types of inhibition of the first enzyme of the pathway by its end product is viewed with the reservoir model for enzyme kinetics. All the data shown here are quantitatively related to the kinetic constants of the implicated enzymes. Particular attention has been paid to calculate the time needed to achieve half of the possible total synthesis of the final product of a metabolic pathway.

摘要

本报告的主要目的是展示 Mathematica 程序在模拟酶线性途径以及描绘改变一个或多个酶的 Vmax 和/或 Km 值对反应过程的影响方面的有用性和多功能性。此外,还通过酶动力学的储库模型分析了途径的第一酶受到其终产物的不同类型抑制。这里显示的所有数据都与涉及的酶的动力学常数定量相关。特别注意计算达到代谢途径最终产物的可能总合成的一半所需的时间。

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