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CNV 相互易位的遗传结构。

Genetic architecture of reciprocal CNVs.

机构信息

Center for Human Disease Modeling, Duke University, Durham 27710, USA.

出版信息

Curr Opin Genet Dev. 2013 Jun;23(3):240-8. doi: 10.1016/j.gde.2013.04.013. Epub 2013 Jun 5.

DOI:10.1016/j.gde.2013.04.013
PMID:23747035
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3740179/
Abstract

Copy number variants (CNVs) represent a frequent type of lesion in human genetic disorders that typically affects numerous genes simultaneously. This has raised the challenge of understanding which genes within a CNV drive clinical phenotypes. Although CNVs can arise by multiple mechanisms, a subset is driven by local genomic architecture permissive to recombination events that can lead to both deletions and duplications. Phenotypic analyses of patients with such reciprocal CNVs have revealed instances in which the phenotype is either identical or mirrored; strikingly, molecular studies have shown that such phenotypes are often driven by reciprocal dosage defects of the same transcript. Here we explore how these observations can help the dissection of CNVs and inform the genetic architecture of CNV-induced disorders.

摘要

拷贝数变异(CNVs)是人类遗传疾病中常见的病变类型,通常会同时影响多个基因。这就提出了一个挑战,即需要了解 CNV 中哪些基因会导致临床表型。虽然 CNVs 可以通过多种机制产生,但其中一部分是由局部基因组结构驱动的,这些结构有利于重组事件的发生,从而导致缺失和重复。对具有这种相互 CNV 的患者进行的表型分析揭示了这样一种情况,即表型要么完全相同,要么完全相反;引人注目的是,分子研究表明,这种表型通常是由同一转录物的相互剂量缺陷所驱动的。在这里,我们探讨这些观察结果如何帮助我们解析 CNV,并为 CNV 诱导疾病的遗传结构提供信息。

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Cereb Cortex. 2025 Feb 5;35(2). doi: 10.1093/cercor/bhae474.
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Multilevel Gene Expression Changes in Lineages Containing Adaptive Copy Number Variants.包含适应性拷贝数变异的谱系中的多级基因表达变化。

本文引用的文献

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Enhanced maternal origin of the 22q11.2 deletion in velocardiofacial and DiGeorge syndromes.22q11.2 缺失与心脏面部血管发育不良综合征和 DiGeorge 综合征的母源性增强。
Am J Hum Genet. 2013 Mar 7;92(3):439-47. doi: 10.1016/j.ajhg.2013.01.018. Epub 2013 Feb 28.
2
Spectrum of elastin sequence variants and cardiovascular phenotypes in 49 patients with Williams-Beuren syndrome.49 例威廉姆斯-贝伦综合征患者的弹性蛋白序列变异和心血管表型谱。
Am J Med Genet A. 2013 Mar;161A(3):527-33. doi: 10.1002/ajmg.a.35784. Epub 2013 Feb 7.
3
Detection of copy number variants reveals association of cilia genes with neural tube defects.
Mol Biol Evol. 2025 Feb 3;42(2). doi: 10.1093/molbev/msaf005.
4
Delineation of the Genetic Architecture and Clinical Polymorphism of 3q29 Duplication Syndrome: A Review of the Literature and a Report of Two Novel Patients With Single-Gene BDH1 Duplications.3q29重复综合征的遗传结构与临床多态性解析:文献综述及两例单基因BDH1重复新病例报告
Mol Genet Genomic Med. 2025 Jan;13(1):e70047. doi: 10.1002/mgg3.70047.
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The pleiotropic spectrum of proximal 16p11.2 CNVs.近端 16p11.2 CNVs 的多效性谱。
Am J Hum Genet. 2024 Nov 7;111(11):2309-2346. doi: 10.1016/j.ajhg.2024.08.015. Epub 2024 Sep 26.
6
Rare copy-number variants as modulators of common disease susceptibility.罕见的拷贝数变异作为常见疾病易感性的调节因子。
Genome Med. 2024 Jan 8;16(1):5. doi: 10.1186/s13073-023-01265-5.
7
Dissecting the autism-associated 16p11.2 locus identifies multiple drivers in neuroanatomical phenotypes and unveils a male-specific role for the major vault protein.解析自闭症相关的 16p11.2 基因座,鉴定出多个神经解剖表型的驱动因素,并揭示了主要穹窿蛋白的雄性特异性作用。
Genome Biol. 2023 Nov 15;24(1):261. doi: 10.1186/s13059-023-03092-8.
8
Multilevel gene expression changes in lineages containing adaptive copy number variants.包含适应性拷贝数变异的谱系中的多级基因表达变化。
bioRxiv. 2024 Jul 9:2023.10.20.563336. doi: 10.1101/2023.10.20.563336.
9
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Genes (Basel). 2022 Dec 4;13(12):2285. doi: 10.3390/genes13122285.
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Copy-number disorders are a common cause of congenital kidney malformations.拷贝数异常是先天性肾脏畸形的常见原因。
Am J Hum Genet. 2012 Dec 7;91(6):987-97. doi: 10.1016/j.ajhg.2012.10.007. Epub 2012 Nov 15.
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Contribution of rare copy number variants to isolated human malformations.罕见拷贝数变异对孤立性人类畸形的贡献。
PLoS One. 2012;7(10):e45530. doi: 10.1371/journal.pone.0045530. Epub 2012 Oct 3.
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Phenotypic heterogeneity of genomic disorders and rare copy-number variants.基因组疾病和罕见拷贝数变异的表型异质性。
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KCTD13 is a major driver of mirrored neuroanatomical phenotypes of the 16p11.2 copy number variant.KCTD13 是 16p11.2 拷贝数变异导致镜像神经解剖表型的主要驱动因素。
Nature. 2012 May 16;485(7398):363-7. doi: 10.1038/nature11091.
10
Copy number variation detection and genotyping from exome sequence data.外显子组序列数据中的拷贝数变异检测和基因分型。
Genome Res. 2012 Aug;22(8):1525-32. doi: 10.1101/gr.138115.112. Epub 2012 May 14.