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从细菌蛋白质N-连接糖基化系统生成游离寡糖。

Generation of free oligosaccharides from bacterial protein N-linked glycosylation systems.

作者信息

Dwivedi Ritika, Nothaft Harald, Reiz Bela, Whittal Randy M, Szymanski Christine M

机构信息

Alberta Glycomics Center and Department of Biological Sciences, University of Alberta, Canada.

出版信息

Biopolymers. 2013 Oct;99(10):772-83. doi: 10.1002/bip.22296.

Abstract

All Campylobacter species are capable of N-glycosylating their proteins and releasing the same oligosaccharides into the periplasm as free oligosaccharides (fOS). Previously, analysis of fOS production in Campylobacter required fOS derivatization or large culture volumes and several chromatography steps prior to fOS analysis. In this study, label-free fOS extraction and purification methods were developed and coupled with quantitative analysis techniques. Our method follows three simple steps: (1) fOS extraction from the periplasmic space, (2) fOS purification using silica gel chromatography followed by porous graphitized carbon purification and (3) fOS analysis and accurate quantitation using a combination of thin-layer chromatography, mass spectrometry, NMR, and high performance anion exchange chromatography with pulsed amperometric detection. We applied our techniques to analyze fOS from C. jejuni, C. lari, C. rectus, and C. fetus fetus that produce different fOS structures. We accurately quantified fOS in Campylobacter species that ranged from 7.80 (±0.84) to 49.82 (±0.46) nmoles per gram of wet cell pellet and determined that the C. jejuni fOS comprises 2.5% of the dry cell weight. In addition, a novel di-phosphorylated fOS species was identified in C. lari. This method provides a sensitive and quantitative method to investigate the genesis, biology and breakdown of fOS in the bacterial N-glycosylation systems.

摘要

所有弯曲杆菌属细菌都能够对其蛋白质进行N-糖基化,并将相同的寡糖作为游离寡糖(fOS)释放到周质中。此前,弯曲杆菌中fOS产生的分析需要fOS衍生化或大量培养物,并且在fOS分析之前需要几个色谱步骤。在本研究中,开发了无标记的fOS提取和纯化方法,并与定量分析技术相结合。我们的方法遵循三个简单步骤:(1)从周质空间提取fOS,(2)使用硅胶色谱进行fOS纯化,随后进行多孔石墨化碳纯化,以及(3)使用薄层色谱、质谱、核磁共振和带脉冲安培检测的高效阴离子交换色谱相结合的方法对fOS进行分析和准确定量。我们应用我们的技术分析了空肠弯曲杆菌、海鸥弯曲杆菌、直肠弯曲杆菌和胎儿弯曲杆菌胎儿产生的不同fOS结构。我们准确地定量了弯曲杆菌属细菌中的fOS,范围为每克湿细胞沉淀7.80(±0.84)至49.82(±0.46)纳摩尔,并确定空肠弯曲杆菌fOS占干细胞重量的2.5%。此外,在海鸥弯曲杆菌中鉴定出一种新型的二磷酸化fOS种类。该方法为研究细菌N-糖基化系统中fOS的产生、生物学特性和分解提供了一种灵敏且定量的方法。

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