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硝化杆菌属新种,黄杆菌科淀粉分解菌,从沿海表层海水分离得到。

Flavobacterium nitratireducens sp. nov., an amylolytic bacterium of the family Flavobacteriaceae isolated from coastal surface seawater.

机构信息

MTCC-Microbial Type Culture Collection & Gene Bank, Institute of Microbial Technology, Chandigarh-160036, India.

National Institute of Oceanography, Regional Centre, Council of Scientific and Industrial Research (CSIR), Kochi-682018, India.

出版信息

Int J Syst Evol Microbiol. 2013 Jul;63(Pt 7):2490-2496. doi: 10.1099/ijs.0.046524-0. Epub 2012 Dec 7.

Abstract

A novel Gram-negative, rod-shaped, non-motile bacterium, designated strain N1(T), was isolated from a marine water sample collected from the sea shore, Bay of Bengal, Visakhapatnam, India. The strain was positive for starch hydrolysis, nitrate reduction and ornithine decarboxylase activities and negative for citrate utilization, urease, oxidase, catalase and DNase activities. The predominant fatty acids were C16 : 0 3-OH, iso-C15 : 0, iso-C15 : 0 3-OH, iso-C17 : 0 3-OH, anteiso-C15 : 0, C16 : 0, C15 : 0 3-OH, and C16 : 1ω7c and/or iso-C15 : 0 2-OH (summed feature 3). Strain N1(T) contained menaquinone 6 (MK-6) as the sole respiratory quinone. The only polyamine was homospermidine and the major polar lipids were phosphatidylethanolamine (PE), three unidentified aminolipids (AL1-AL3) and two unidentified lipids (L1, L2). The DNA G+C content of the strain was 36.3 mol%. 16S rRNA gene sequence analysis indicated that strain N1(T) was a member of the genus Flavobacterium and closely related to Flavobacterium resistens with pairwise sequence similarity of 96.5 %. Phylogenetic analysis showed that strain N1(T) clustered with Flavobacterium glycines and Flavobacterium daejeonense with a distance of 4.8 and 6.0 % (95.2 and 94.0 % similarity), respectively. Based on the phenotypic characteristics and on phylogenetic inference, strain N1(T) represents a novel species of the genus Flavobacterium, for which the name Flavobacterium nitratireducens sp. nov. is proposed. The type strain is N1(T) ( = MTCC 11155(T) = JCM 17678(T)).

摘要

一株新型革兰氏阴性、杆状、非运动细菌,命名为 N1(T) 菌株,从印度孟加拉湾维沙卡帕特南海岸的海水样本中分离得到。该菌株阳性淀粉水解、硝酸盐还原和鸟氨酸脱羧酶活性,阴性柠檬酸利用、脲酶、氧化酶、过氧化氢酶和 DNA 酶活性。主要脂肪酸为 C16:0 3-OH、iso-C15:0、iso-C15:0 3-OH、iso-C17:0 3-OH、anteiso-C15:0、C16:0、C15:0 3-OH 和 C16:1ω7c 和/或 iso-C15:0 2-OH(特征 3 总和)。N1(T) 菌株含有menaquinone 6(MK-6)作为唯一的呼吸醌。唯一的多胺是腐胺,主要极性脂为磷脂酰乙醇胺(PE)、三种未鉴定的氨基脂(AL1-AL3)和两种未鉴定的脂(L1、L2)。菌株的 DNA G+C 含量为 36.3 mol%。16S rRNA 基因序列分析表明,N1(T) 菌株是黄杆菌属的一个成员,与 Flavobacterium resistens 具有 96.5%的序列相似性,关系最为密切。系统发育分析表明,N1(T) 菌株与 Flavobacterium glycines 和 Flavobacterium daejeonense 聚类,距离分别为 4.8%和 6.0%(相似度分别为 95.2%和 94.0%)。基于表型特征和系统发育推断,N1(T) 菌株代表黄杆菌属的一个新种,命名为 Flavobacterium nitratireducens sp. nov. 。模式菌株为 N1(T)(=MTCC 11155(T)=JCM 17678(T))。

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