艾丁湖盐芽孢杆菌菌株MSP4的基因组草图序列，该菌株是从印度库奇兰恩盐结晶器中分离出的一种专性嗜盐细菌。
Draft Genome Sequence of Salinibacillus aidingensis Strain MSP4, an Obligate Halophilic Bacterium Isolated from a Salt Crystallizer of the Rann of Kutch, India.
作者信息
Pal Kamal Krishna, Dey Rinku, Sherathia Dharmesh, Dalsania Trupti, Savsani Kinjal, Patel Ilaxi, Thomas Manesh, Ghorai Sucheta, Vanpariya Sejal, Rupapara Rupal, Acharya Namrata, Rawal Priya, Joshi Pragnesh, Sukhadiya Bhoomika, Mandaliya Mona, Saxena Anil Kumar
机构信息
Microbiology Section, Directorate of Groundnut Research, Junagadh, Gujarat, India.
出版信息
Genome Announc. 2013 Jul 5;1(4):e00253-13. doi: 10.1128/genomeA.00253-13.
Abstract
We report the 7.42-Mbp draft whole genome sequence of Salinibacillus aidingensis strain MSP4, an obligate halophilic bacterium, isolated from a salt crystallizer of the Rann of Kutch in India. Analysis of the genome of this organism will lead to a better understanding of the genes and metabolic pathways involved in imparting osmotolerance.
摘要
我们报告了嗜盐芽孢杆菌MSP4菌株的742万碱基对全基因组草图序列，该菌株是一种专性嗜盐细菌，从印度库奇兰恩的一个盐结晶器中分离得到。对该生物体基因组的分析将有助于更好地理解赋予渗透耐受性所涉及的基因和代谢途径。
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本文引用的文献
1
SignalP 4.0: discriminating signal peptides from transmembrane regions.信号肽预测工具SignalP 4.0：区分信号肽与跨膜区域。
Nat Methods. 2011 Sep 29;8(10):785-6. doi: 10.1038/nmeth.1701.
2
The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
3
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.RNAmmer：核糖体RNA基因的一致性快速注释
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
4
Identifying bacterial genes and endosymbiont DNA with Glimmer.使用Glimmer识别细菌基因和内共生体DNA。
Bioinformatics. 2007 Mar 15;23(6):673-9. doi: 10.1093/bioinformatics/btm009. Epub 2007 Jan 19.
5
The KEGG resource for deciphering the genome.用于解读基因组的KEGG资源。
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D277-80. doi: 10.1093/nar/gkh063.
6
GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.GeneMarkS：一种用于预测微生物基因组中基因起始位点的自训练方法。对在调控区域中寻找序列基序的启示。
Nucleic Acids Res. 2001 Jun 15;29(12):2607-18. doi: 10.1093/nar/29.12.2607.
7
GeneMark.hmm: new solutions for gene finding.基因标记隐马尔可夫模型：基因发现的新解决方案。
Nucleic Acids Res. 1998 Feb 15;26(4):1107-15. doi: 10.1093/nar/26.4.1107.
8
Microbial gene identification using interpolated Markov models.使用插值马尔可夫模型进行微生物基因识别。
Nucleic Acids Res. 1998 Jan 15;26(2):544-8. doi: 10.1093/nar/26.2.544.
9
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.tRNAscan-SE：用于改进基因组序列中转运RNA基因检测的程序。
Nucleic Acids Res. 1997 Mar 1;25(5):955-64. doi: 10.1093/nar/25.5.955.
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