嗜盐沉积物芽孢杆菌属（Sediminibacillus halophilus）菌株NSP9.3的初稿基因组序列解析
Insight into the First Draft Genome Sequence of the Genus Sediminibacillus, Sediminibacillus halophilus Strain NSP9.3.
作者信息
Dey Rinku, Pal Kamal Krishna, Sherathia Dharmesh, Sukhadiya Bhoomika, Dalsania Trupti, Patel Ilaxi, Savsani Kinjal, Thomas Manesh, Vanpariya Sejal, Mandaliya Mona, Rupapara Rupal, Rawal Priya, Ghorai Sucheta, Bhayani Sharmila, Shah Abhi, Saxena Anil Kumar
机构信息
Microbiology Section, Directorate of Groundnut Research, Junagadh, Gujarat, India.
出版信息
Genome Announc. 2014 Jan 9;2(1):e01133-13. doi: 10.1128/genomeA.01133-13.
Abstract
We report the 3.98-Mbp first draft genome sequence of Sediminibacillus halophilus strain NSP9.3, a moderate halophile isolated from a seasonal salt marsh of the Great Rann of Kutch, India. Exploring the genome of this organism will facilitate the understanding of the mechanism(s) of osmotolerance and survival in differential osmolarity.
摘要
我们报道了嗜盐沉积物芽孢杆菌NSP9.3菌株的398万碱基对的初步基因组序列，该菌株是从印度库奇大盐沼的季节性盐沼中分离出的中度嗜盐菌。探索该生物体的基因组将有助于理解其渗透压耐受性和在不同渗透压下生存的机制。
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本文引用的文献
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Draft Genome Sequence of Bacillus sp. Strain NSP9.1, a Moderately Halophilic Bacterium Isolated from the Salt Marsh of the Great Rann of Kutch, India.芽孢杆菌属菌株NSP9.1的基因组草图序列，该菌株是从印度库奇大盐沼的盐沼中分离出的中度嗜盐细菌。
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3
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4
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5
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7
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