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Synthesis, kinetics and inhibition of Escherichia coli Heptosyltransferase I by monosaccharide analogues of Lipid A.脂多糖单糖类似物对大肠杆菌庚糖基转移酶 I 的合成、动力学及抑制作用的研究
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The Stories Tryptophans Tell: Exploring Protein Dynamics of Heptosyltransferase I from Escherichia coli.色氨酸讲述的故事:探索来自大肠杆菌的庚糖基转移酶I的蛋白质动力学
Biochemistry. 2017 Feb 14;56(6):886-895. doi: 10.1021/acs.biochem.6b00850. Epub 2017 Jan 30.

本文引用的文献

1
Lipopolysaccharide biosynthesis without the lipids: recognition promiscuity of Escherichia coli heptosyltransferase I.脂多糖生物合成无需脂质:大肠杆菌庚糖基转移酶 I 的识别混杂性。
Biochemistry. 2011 Dec 13;50(49):10570-2. doi: 10.1021/bi201581b. Epub 2011 Nov 15.
2
Structural and kinetic characterization of the LPS biosynthetic enzyme D-alpha,beta-D-heptose-1,7-bisphosphate phosphatase (GmhB) from Escherichia coli.大肠杆菌脂多糖生物合成酶 D-α,β-D-庚糖-1,7-双磷酸磷酸酶(GmhB)的结构和动力学特征。
Biochemistry. 2010 Feb 9;49(5):1033-41. doi: 10.1021/bi901780j.
3
Dissection of the stepwise mechanism to beta-lactam formation and elucidation of a rate-determining conformational change in beta-lactam synthetase.β-内酰胺形成的逐步机制剖析及β-内酰胺合成酶中速率决定构象变化的阐明。
J Biol Chem. 2009 Jan 2;284(1):207-217. doi: 10.1074/jbc.M805390200. Epub 2008 Oct 27.
4
Glycosyltransferases: structures, functions, and mechanisms.糖基转移酶:结构、功能及作用机制
Annu Rev Biochem. 2008;77:521-55. doi: 10.1146/annurev.biochem.76.061005.092322.
5
Structural and enzymatic analysis of MshA from Corynebacterium glutamicum: substrate-assisted catalysis.谷氨酸棒杆菌MshA的结构与酶学分析:底物辅助催化
J Biol Chem. 2008 Jun 6;283(23):15834-44. doi: 10.1074/jbc.M801017200. Epub 2008 Apr 4.
6
Lipid A modification systems in gram-negative bacteria.革兰氏阴性菌中的脂多糖A修饰系统。
Annu Rev Biochem. 2007;76:295-329. doi: 10.1146/annurev.biochem.76.010307.145803.
7
Structure of the Escherichia coli heptosyltransferase WaaC: binary complexes with ADP and ADP-2-deoxy-2-fluoro heptose.大肠杆菌庚糖基转移酶WaaC的结构:与ADP和ADP-2-脱氧-2-氟庚糖形成的二元复合物
J Mol Biol. 2006 Oct 20;363(2):383-94. doi: 10.1016/j.jmb.2006.07.057. Epub 2006 Jul 29.
8
Structure of the TDP-epi-vancosaminyltransferase GtfA from the chloroeremomycin biosynthetic pathway.来自氯异戊霉素生物合成途径的TDP-表万古糖胺基转移酶GtfA的结构
Proc Natl Acad Sci U S A. 2003 Aug 5;100(16):9238-43. doi: 10.1073/pnas.1233577100. Epub 2003 Jul 21.
9
Crystal structure of the MurG:UDP-GlcNAc complex reveals common structural principles of a superfamily of glycosyltransferases.MurG:UDP-葡萄糖胺复合物的晶体结构揭示了糖基转移酶超家族的共同结构原理。
Proc Natl Acad Sci U S A. 2003 Feb 4;100(3):845-9. doi: 10.1073/pnas.0235749100. Epub 2003 Jan 21.
10
The 1.9 A crystal structure of Escherichia coli MurG, a membrane-associated glycosyltransferase involved in peptidoglycan biosynthesis.大肠杆菌MurG的1.9埃晶体结构,MurG是一种参与肽聚糖生物合成的膜相关糖基转移酶。
Protein Sci. 2000 Jun;9(6):1045-52. doi: 10.1110/ps.9.6.1045.

大肠杆菌庚糖基转移酶 I:GT-B 结构酶的蛋白质动力学研究。

Escherichia coli heptosyltransferase I: investigation of protein dynamics of a GT-B structural enzyme.

机构信息

Department of Chemistry, Wesleyan University , Middletown, Connecticut 06459, United States.

出版信息

Biochemistry. 2013 Aug 6;52(31):5158-60. doi: 10.1021/bi400807r. Epub 2013 Jul 23.

DOI:10.1021/bi400807r
PMID:23865375
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3867311/
Abstract

Heptosyltransferase I (HepI), the enzyme responsible for the transfer of l-glycero-d-manno-heptose to a 3-deoxy-α-d-manno-oct-2-ulopyranosonic acid (Kdo) of the growing core region of lipopolysaccharide, is a member of the GT-B structural class of enzymes. Crystal structures have revealed open and closed conformations of apo and ligand-bound GT-B enzymes, implying that large-scale protein conformational dynamics play a role in their reaction mechanism. Here we report transient kinetic analysis of conformational changes in HepI reported by intrinsic tryptophan fluorescence and present the first real-time evidence of a GT-B enzyme undergoing a substrate binding-induced transition from an open to closed state prior to catalysis.

摘要

七磷酸葡萄糖基转移酶 I(HepI)是一种酶,负责将 l-甘油基-d-甘露庚糖转移到脂多糖生长核心区域的 3-脱氧-α-d-甘露-oct-2-烯吡喃糖酸(Kdo)上,它是 GT-B 结构类酶的成员。晶体结构揭示了 apo 和配体结合的 GT-B 酶的开放和闭合构象,这意味着大规模的蛋白质构象动力学在它们的反应机制中发挥作用。在这里,我们通过本征色氨酸荧光报告了 HepI 构象变化的瞬态动力学分析,并首次实时证明 GT-B 酶在催化前经历了一个从开放状态到闭合状态的底物结合诱导转变。