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Chemical shift assignments of domain 4 from the phosphohexomutase from Pseudomonas aeruginosa suggest that freeing perturbs its coevolved domain interface.铜绿假单胞菌磷酸己糖变位酶4结构域的化学位移归属表明,游离作用扰乱了其共同进化的结构域界面。
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2
The reaction of phosphohexomutase from Pseudomonas aeruginosa: structural insights into a simple processive enzyme.铜绿假单胞菌磷酸己糖变位酶的反应:对一种简单的持续性酶的结构见解。
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3
Promotion of enzyme flexibility by dephosphorylation and coupling to the catalytic mechanism of a phosphohexomutase.通过去磷酸化和与磷酸己糖变位酶的催化机制偶联促进酶的灵活性。
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Crystal structure of PMM/PGM: an enzyme in the biosynthetic pathway of P. aeruginosa virulence factors.磷酸甘露糖变位酶/磷酸葡萄糖变位酶的晶体结构:铜绿假单胞菌毒力因子生物合成途径中的一种酶
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A coevolutionary residue network at the site of a functionally important conformational change in a phosphohexomutase enzyme family.磷酸己糖变位酶家族中一个功能重要的构象变化部位的协同进化残基网络。
PLoS One. 2012;7(6):e38114. doi: 10.1371/journal.pone.0038114. Epub 2012 Jun 7.
8
Crystallization and initial crystallographic analysis of phosphomannomutase/phosphoglucomutase from Pseudomonas aeruginosa.铜绿假单胞菌磷酸甘露糖变位酶/磷酸葡萄糖变位酶的结晶及初步晶体学分析
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10
Backbone flexibility, conformational change, and catalysis in a phosphohexomutase from Pseudomonas aeruginosa.铜绿假单胞菌磷酸己糖变位酶的主链灵活性、构象变化及催化作用
Biochemistry. 2008 Sep 2;47(35):9154-62. doi: 10.1021/bi8005219. Epub 2008 Aug 9.

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1
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Adv Protein Chem Struct Biol. 2017;109:265-304. doi: 10.1016/bs.apcsb.2017.04.005. Epub 2017 May 17.
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J Inherit Metab Dis. 2015 Mar;38(2):243-56. doi: 10.1007/s10545-014-9757-9. Epub 2014 Aug 29.
4
Promotion of enzyme flexibility by dephosphorylation and coupling to the catalytic mechanism of a phosphohexomutase.通过去磷酸化和与磷酸己糖变位酶的催化机制偶联促进酶的灵活性。
J Biol Chem. 2014 Feb 21;289(8):4674-82. doi: 10.1074/jbc.M113.532226. Epub 2014 Jan 8.

本文引用的文献

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Conservation of functionally important global motions in an enzyme superfamily across varying quaternary structures.在不同的四级结构中,保持酶超家族中功能重要的全局运动。
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A constant-time (13)C- (1)H HSQC with uniform excitation over the complete (13)C chemical shift range.一种在完整的 (13)C 化学位移范围内实现均匀激发的恒定时间 (13)C-(1)H HSQC。
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A coevolutionary residue network at the site of a functionally important conformational change in a phosphohexomutase enzyme family.磷酸己糖变位酶家族中一个功能重要的构象变化部位的协同进化残基网络。
PLoS One. 2012;7(6):e38114. doi: 10.1371/journal.pone.0038114. Epub 2012 Jun 7.
4
Solution NMR of a 463-residue phosphohexomutase: domain 4 mobility, substates, and phosphoryl transfer defect.磷酸己糖变位酶 463 残基的溶液 NMR:结构域 4 的迁移率、亚基状态和磷酸转移缺陷。
Biochemistry. 2012 Jan 24;51(3):807-19. doi: 10.1021/bi201609n. Epub 2012 Jan 17.
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Domain motion and interdomain hot spots in a multidomain enzyme.多结构域酶中的结构域运动和结构域热点。
Protein Sci. 2010 Sep;19(9):1662-72. doi: 10.1002/pro.446.
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Breaking the covalent connection: Chain connectivity and the catalytic reaction of PMM/PGM.打破共价键:链连接性和 PMM/PGM 的催化反应。
Protein Sci. 2010 Jun;19(6):1235-42. doi: 10.1002/pro.402.
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SAGA: rapid automatic mainchain NMR assignment for large proteins.SAGA:用于大型蛋白质的快速自动主链 NMR 分配。
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8
Backbone flexibility, conformational change, and catalysis in a phosphohexomutase from Pseudomonas aeruginosa.铜绿假单胞菌磷酸己糖变位酶的主链灵活性、构象变化及催化作用
Biochemistry. 2008 Sep 2;47(35):9154-62. doi: 10.1021/bi8005219. Epub 2008 Aug 9.
9
CS23D: a web server for rapid protein structure generation using NMR chemical shifts and sequence data.CS23D:一个利用核磁共振化学位移和序列数据快速生成蛋白质结构的网络服务器。
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A set of BEST triple-resonance experiments for time-optimized protein resonance assignment.一组用于时间优化蛋白质共振归属的最佳三重共振实验。
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铜绿假单胞菌磷酸己糖变位酶4结构域的化学位移归属表明,游离作用扰乱了其共同进化的结构域界面。

Chemical shift assignments of domain 4 from the phosphohexomutase from Pseudomonas aeruginosa suggest that freeing perturbs its coevolved domain interface.

作者信息

Wei Yirui, Marcink Thomas C, Xu Jia, Sirianni Arthur G, Sarma Akella V S, Prior Stephen H, Beamer Lesa J, Van Doren Steven R

机构信息

Biochemistry Department, University of Missouri, 117 Schweitzer Hall, Columbia, MO, 65211, USA.

出版信息

Biomol NMR Assign. 2014 Oct;8(2):329-33. doi: 10.1007/s12104-013-9511-5. Epub 2013 Jul 28.

DOI:10.1007/s12104-013-9511-5
PMID:23893395
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3905050/
Abstract

A domain needed for the catalytic efficiency of an enzyme model of simple processivity and domain-domain interactions has been characterized by NMR. This domain 4 from phosphomannomutase/phosphoglucomutase (PMM/PGM) closes upon glucose phosphate and mannose phosphate ligands in the active site, and can modestly reconstitute activity of enzyme truncated to domains 1-3. This enzyme supports biosynthesis of the saccharide-derived virulence factors (rhamnolipids, lipopolysaccharides, and alginate) of the opportunistic bacterial pathogen Pseudomonas aeruginosa. (1)H, (13)C, and (15)N NMR chemical shift assignments of domain 4 of PMM/PGM suggest preservation and independence of its structure when separated from domains 1-3. The face of domain 4 that packs with domain 3 is perturbed in NMR spectra without disrupting this fold. The perturbed residues overlap both the most highly coevolved positions in the interface and residues lining a cavity at the domain interface.

摘要

一个对于具有简单持续性和结构域-结构域相互作用的酶模型的催化效率而言必不可少的结构域已通过核磁共振(NMR)进行了表征。磷酸甘露糖变位酶/磷酸葡萄糖变位酶(PMM/PGM)的这个结构域4在活性位点与磷酸葡萄糖和磷酸甘露糖配体结合时会闭合,并且能适度地重建截短为结构域1 - 3的酶的活性。这种酶支持机会性细菌病原体铜绿假单胞菌的糖类衍生毒力因子(鼠李糖脂、脂多糖和藻酸盐)的生物合成。PMM/PGM结构域4的氢-1(¹H)、碳-13(¹³C)和氮-15(¹⁵N)核磁共振化学位移归属表明,当它与结构域1 - 3分离时,其结构得以保留且具有独立性。在核磁共振谱中,结构域4与结构域3堆积的那一面受到了扰动,但并未破坏这种折叠结构。受扰动的残基既重叠于界面处协同进化程度最高的位置,也重叠于结构域界面处一个腔的内壁残基。