东方拟无枝菌酸菌东方亚种DSM 43388和DSM 46075菌株的基因组序列
Genome Sequences of Amycolatopsis orientalis subsp. orientalis Strains DSM 43388 and DSM 46075.
作者信息
Jeong Haeyoung, Sim Young Mi, Kim Hyun Ju, Lee Yong-Jik, Lee Dong-Woo, Lim Si-Kyu, Lee Sang Jun
机构信息
Korean Bioinformation Center, Korea Research Institute of Bioscience and Technology (KRIBB), Daejeon, Republic of Korea.
出版信息
Genome Announc. 2013 Aug 1;1(4):e00545-13. doi: 10.1128/genomeA.00545-13.
Abstract
Strains of Amycolatopsis orientalis produce vancomycin or other related glycopeptide antibiotic compounds. Here we report the draft genome sequences of glycopeptide nonproducers Amycolatopsis orientalis subsp. orientalis DSM 43388 and DSM 46075. Their genome information will provide insights into the acquisition and regulation of glycopeptide antibiotic resistance genes.
摘要
东方拟无枝菌酸菌菌株可产生万古霉素或其他相关的糖肽类抗生素化合物。在此，我们报告了糖肽非产生菌东方拟无枝菌酸菌亚种DSM 43388和DSM 46075的基因组草图序列。它们的基因组信息将为深入了解糖肽类抗生素抗性基因的获得与调控提供线索。
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5
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Biotechniques. 2003 Nov;35(5):932-4, 936. doi: 10.2144/03355bm05.
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