产万古霉素东方拟无枝酸菌东方亚种菌株KCTC 9412T的基因组序列
Genome Sequence of the Vancomycin-Producing Amycolatopsis orientalis subsp. orientalis Strain KCTC 9412T.
作者信息
Jeong Haeyoung, Sim Young Mi, Kim Hyun Ju, Lee Dong-Woo, Lim Si-Kyu, Lee Sang Jun
机构信息
Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, Republic of Korea.
出版信息
Genome Announc. 2013 Jun 27;1(3):e00408-13. doi: 10.1128/genomeA.00408-13.
Abstract
Amycolatopsis orientalis is the producer of vancomycin, a glycopeptide antibiotic that is used for the treatment of serious infections with Gram-positive bacteria. Here we present the next-generation sequencing (NGS)-based 9.06-Mb draft genome sequence of the type strain Amycolatopsis orientalis subsp. orientalis KCTC 9412 (DSM 40040; ATCC 19795).
摘要
东方拟无枝酸菌是万古霉素的产生菌，万古霉素是一种糖肽类抗生素，用于治疗革兰氏阳性菌引起的严重感染。在此，我们展示了基于二代测序（NGS）的东方拟无枝酸菌亚种东方拟无枝酸菌模式菌株KCTC 9412（DSM 40040；ATCC 19795）的9.06 Mb草图基因组序列。
相似文献
1
Genome Sequence of the Vancomycin-Producing Amycolatopsis orientalis subsp. orientalis Strain KCTC 9412T.产万古霉素东方拟无枝酸菌东方亚种菌株KCTC 9412T的基因组序列
Genome Announc. 2013 Jun 27;1(3):e00408-13. doi: 10.1128/genomeA.00408-13.
2
Genome Sequences of Amycolatopsis orientalis subsp. orientalis Strains DSM 43388 and DSM 46075.东方拟无枝菌酸菌东方亚种DSM 43388和DSM 46075菌株的基因组序列
Genome Announc. 2013 Aug 1;1(4):e00545-13. doi: 10.1128/genomeA.00545-13.
3
Complete genome sequence and comparative genomic analyses of the vancomycin-producing Amycolatopsis orientalis.产万古霉素东方拟无枝酸菌的全基因组序列及比较基因组分析
BMC Genomics. 2014 May 13;15(1):363. doi: 10.1186/1471-2164-15-363.
4
Strategy for Producing the High-Quality Glycopeptide Antibiotic A82846B in Based on the CRISPR-Cas12a System.基于 CRISPR-Cas12a 系统的高产高质量糖肽类抗生素 A82846B 的策略。
ACS Synth Biol. 2021 Nov 19;10(11):3009-3016. doi: 10.1021/acssynbio.1c00317. Epub 2021 Oct 10.
5
Draft Genome Sequence of Norvancomycin-Producing Strain Amycolatopsis orientalis CPCC200066.产去甲万古霉素菌株东方拟无枝菌酸菌CPCC200066的基因组序列草图
Genome Announc. 2015 May 14;3(3):e00296-15. doi: 10.1128/genomeA.00296-15.
6
Complete genome sequence of Amycolatopsis orientalis CPCC200066, the producer of norvancomycin.去甲万古霉素产生菌东方拟无枝酸菌CPCC200066的全基因组序列
J Biotechnol. 2017 Apr 10;247:6-10. doi: 10.1016/j.jbiotec.2017.02.013. Epub 2017 Feb 16.
7
Glycopeptide antibiotic resistance genes in glycopeptide-producing organisms.产生糖肽类抗生素的生物体中的糖肽类抗生素抗性基因。
Antimicrob Agents Chemother. 1998 Sep;42(9):2215-20. doi: 10.1128/AAC.42.9.2215.
8
Three new antibiotic producing species of the genus Amycolatopsis, Amycolatopsis balhimycina sp. nov., A. tolypomycina sp. nov., A. vancoresmycina sp. nov., and description of Amycolatopsis keratiniphila subsp. keratiniphila subsp. nov. and A. keratiniphila subsp. nogabecina subsp. nov.拟无枝酸菌属的三个新的抗生素产生种，巴尔希拟无枝酸菌新种（Amycolatopsis balhimycina sp. nov.）、托利拟无枝酸菌新种（A. tolypomycina sp. nov.）、万可瑞拟无枝酸菌新种（A. vancoresmycina sp. nov.），以及嗜角蛋白拟无枝酸菌嗜角蛋白亚种新种（Amycolatopsis keratiniphila subsp. keratiniphila subsp. nov.）和嗜角蛋白拟无枝酸菌诺加贝西纳亚种新种（A. keratiniphila subsp. nogabecina subsp. nov.）的描述
Syst Appl Microbiol. 2003 Mar;26(1):38-46. doi: 10.1078/072320203322337290.
9
Reclassification of Amycolatopsis orientalis DSM 43387 as Amycolatopsis benzoatilytica sp. nov.东方拟无枝菌酸菌DSM 43387重新分类为苯甲酸拟无枝菌酸菌新种
Int J Syst Evol Microbiol. 2006 Jan;56(Pt 1):199-204. doi: 10.1099/ijs.0.63766-0.
10
Genome assembly, comparative genomics, and identification of genes/pathways underlying plant growth-promoting traits of an actinobacterial strain, Amycolatopsis sp. (BCA-696).基因组组装、比较基因组学以及鉴定放线菌菌株 Amycolatopsis sp. (BCA-696) 促植物生长特性的基因/途径。
Sci Rep. 2024 Jul 10;14(1):15934. doi: 10.1038/s41598-024-66835-y.
引用本文的文献
1
Complete Genome Assembly of DSM 45807 Allows the Characterization of a Novel Glycopeptide Biosynthetic Gene Cluster.DSM 45807的全基因组组装使得一个新型糖肽生物合成基因簇得以表征。
Genes (Basel). 2024 Dec 22;15(12):1651. doi: 10.3390/genes15121651.
2
Silver nanoparticles synthesized by the heavy metal resistant strain and its application in controlling red strip disease in sugarcane.由重金属抗性菌株合成的银纳米颗粒及其在控制甘蔗赤条病中的应用。
Heliyon. 2022 May 20;8(5):e09472. doi: 10.1016/j.heliyon.2022.e09472. eCollection 2022 May.
3
Comparative genomics and transcriptomics analyses provide insights into the high yield and regulatory mechanism of Norvancomycin biosynthesis in Amycolatopsis orientalis NCPC 2-48.比较基因组学和转录组学分析为东方拟无枝酸菌 NCPC 2-48 中诺凡霉素高产的调控机制提供了新的见解。
Microb Cell Fact. 2021 Feb 2;20(1):28. doi: 10.1186/s12934-021-01521-6.
4
Glycopeptide Antibiotic Resistance Genes: Distribution and Function in the Producer Actinomycetes.糖肽类抗生素抗性基因：在产生放线菌中的分布与功能
Front Microbiol. 2020 Jun 17;11:1173. doi: 10.3389/fmicb.2020.01173. eCollection 2020.
5
Conjugation of ϕBT1-derived integrative plasmid pDZL802 in Amycolatopsis mediterranei U32.源自ϕBT1的整合质粒pDZL802在地中海拟无枝酸菌U32中的接合作用。
Bioengineered. 2017 Sep 3;8(5):549-554. doi: 10.1080/21655979.2016.1270808. Epub 2017 Jan 3.
6
Genetics and Genomics of the Genus Amycolatopsis.拟无枝酸菌属的遗传学与基因组学
Indian J Microbiol. 2016 Sep;56(3):233-46. doi: 10.1007/s12088-016-0590-8. Epub 2016 May 2.
7
Old and New Glycopeptide Antibiotics: Action and Resistance.新旧糖肽类抗生素：作用与耐药性。
Antibiotics (Basel). 2014 Nov 4;3(4):572-94. doi: 10.3390/antibiotics3040572.
8
In Vivo Characterization of the Activation and Interaction of the VanR-VanS Two-Component Regulatory System Controlling Glycopeptide Antibiotic Resistance in Two Related Streptomyces Species.控制两种相关链霉菌属物种中糖肽抗生素抗性的VanR-VanS双组分调节系统的激活与相互作用的体内表征
Antimicrob Agents Chemother. 2015 Dec 28;60(3):1627-37. doi: 10.1128/AAC.01367-15.
9
Draft Genome Sequence of Norvancomycin-Producing Strain Amycolatopsis orientalis CPCC200066.产去甲万古霉素菌株东方拟无枝菌酸菌CPCC200066的基因组序列草图
Genome Announc. 2015 May 14;3(3):e00296-15. doi: 10.1128/genomeA.00296-15.
10
Antibiotic resistance mechanisms inform discovery: identification and characterization of a novel amycolatopsis strain producing ristocetin.抗生素耐药机制助力发现：一种产生瑞斯托菌素的新型无枝酸菌菌株的鉴定与表征
Antimicrob Agents Chemother. 2014 Oct;58(10):5687-95. doi: 10.1128/AAC.03349-14. Epub 2014 Jul 14.
本文引用的文献
1
Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism. Rifamycin SV 产生菌地中海拟无枝酸菌 U32 的全基因组序列揭示了其在系统发育和代谢中的遗传特征。
Cell Res. 2010 Oct;20(10):1096-108. doi: 10.1038/cr.2010.87. Epub 2010 Jun 22.
2
Shifting the genomic gold standard for the prokaryotic species definition.动摇原核生物种定义的基因组黄金标准。
Proc Natl Acad Sci U S A. 2009 Nov 10;106(45):19126-31. doi: 10.1073/pnas.0906412106. Epub 2009 Oct 23.
3
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.《天鹅绒：使用德布鲁因图进行从头短读长拼接的算法》
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.
4
The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
5
Optimization of culture conditions and scale-up to pilot and plant scales for vancomycin production by Amycolatopsis orientalis.东方拟无枝酸菌生产万古霉素的培养条件优化及中试和工业化规模放大
Appl Microbiol Biotechnol. 2007 Dec;77(4):789-95. doi: 10.1007/s00253-007-1221-4. Epub 2007 Oct 16.
6
Vancomycin: a history.万古霉素：一部历史
Clin Infect Dis. 2006 Jan 1;42 Suppl 1:S5-12. doi: 10.1086/491709.
7
Vancomycin: a 50-year reassessment.万古霉素：50年再评估
Clin Infect Dis. 2006 Jan 1;42 Suppl 1:S3-4. doi: 10.1086/491708.
8
High yield preparation of genomic DNA from Streptomyces.从链霉菌中高效制备基因组DNA
Biotechniques. 2003 Nov;35(5):932-4, 936. doi: 10.2144/03355bm05.
9
OrthoMCL: identification of ortholog groups for eukaryotic genomes.OrthoMCL：真核生物基因组直系同源组的鉴定
Genome Res. 2003 Sep;13(9):2178-89. doi: 10.1101/gr.1224503.
10
Glycopeptide antibiotic resistance genes in glycopeptide-producing organisms.产生糖肽类抗生素的生物体中的糖肽类抗生素抗性基因。
Antimicrob Agents Chemother. 1998 Sep;42(9):2215-20. doi: 10.1128/AAC.42.9.2215.
Zotero 插件