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恶臭假单胞菌菌株MTCC5279的基因组序列草图

Draft Genome Sequence of Pseudomonas putida Strain MTCC5279.

作者信息

Chaudhry Vasvi, Asif Mehar H, Bag Sumit, Goel Ridhi, Mantri Shrikant S, Singh Sunil K, Chauhan Puneet S, Sawant Samir V, Nautiyal Chandra Shekhar

机构信息

Council of Scientific and Industrial Research-National Botanical Research Institute (CSIR-NBRI), Rana Pratap Marg, Lucknow, Uttar Pradesh, India.

出版信息

Genome Announc. 2013 Aug 1;1(4):e00560-13. doi: 10.1128/genomeA.00560-13.

DOI:10.1128/genomeA.00560-13
PMID:23908291
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3731845/
Abstract

Here we report the genome sequence of a plant-growth-promoting rhizobacterium, Pseudomonas putida strain MTCC5279. The length of the draft genome sequence is approximately 5.2 Mb, with a GC content of 62.5%. The draft genome sequence reveals a number of genes whose products are possibly involved in plant growth promotion and abiotic stress tolerance.

摘要

在此，我们报告了一种促进植物生长的根际细菌——恶臭假单胞菌MTCC5279菌株的基因组序列。基因组草图序列长度约为5.2 Mb，GC含量为62.5%。该基因组草图序列揭示了许多基因，其产物可能参与促进植物生长和耐受非生物胁迫。

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本文引用的文献

1
Gene expression profiling through microarray analysis in Arabidopsis thaliana colonized by Pseudomonas putida MTCC5279, a plant growth promoting rhizobacterium.通过拟南芥中根瘤菌 Pseudomonas putida MTCC5279 的微阵列分析进行基因表达谱分析，该菌是一种促进植物生长的根瘤菌。
Plant Signal Behav. 2012 Feb;7(2):235-45. doi: 10.4161/psb.18957. Epub 2012 Feb 1.
2
The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
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KAAS: an automatic genome annotation and pathway reconstruction server.KAAS：一个自动基因组注释和通路重建服务器。
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W182-5. doi: 10.1093/nar/gkm321. Epub 2007 May 25.
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RNAmmer: consistent and rapid annotation of ribosomal RNA genes.RNAmmer：核糖体RNA基因的一致性快速注释
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
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Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440.代谢功能多样的恶臭假单胞菌KT2440的全基因组序列及比较分析
Environ Microbiol. 2002 Dec;4(12):799-808. doi: 10.1046/j.1462-2920.2002.00366.x.
6
The COG database: new developments in phylogenetic classification of proteins from complete genomes.COG数据库：来自完整基因组的蛋白质系统发育分类的新进展。
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Improved microbial gene identification with GLIMMER.利用GLIMMER改进微生物基因识别。
Nucleic Acids Res. 1999 Dec 1;27(23):4636-41. doi: 10.1093/nar/27.23.4636.