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分类学和系统学是生物信息学的关键:以拟南芥、盐芥(独尾草)、野芥和 Schrenkiella(十字花科)为例。

Taxonomy and systematics are key to biological information: Arabidopsis, Eutrema (Thellungiella), Noccaea and Schrenkiella (Brassicaceae) as examples.

机构信息

Department of Biodiversity and Plant Systematics, Center for Organismal Studies Heidelberg, Heidelberg University Heidelberg, Germany.

出版信息

Front Plant Sci. 2013 Jul 31;4:267. doi: 10.3389/fpls.2013.00267. eCollection 2013.

Abstract

Taxonomy and systematics provide the names and evolutionary framework for any biological study. Without these names there is no access to a biological context of the evolutionary processes which gave rise to a given taxon: close relatives and sister species (hybridization), more distantly related taxa (ancestral states), for example. This is not only true for the single species a research project is focusing on, but also for its relatives, which might be selected for comparative approaches and future research. Nevertheless, taxonomical and systematic knowledge is rarely fully explored and considered across biological disciplines. One would expect the situation to be more developed with model organisms such as Noccaea, Arabidopsis, Schrenkiella and Eutrema (Thellungiella). However, we show the reverse. Using Arabidopsis halleri and Noccaea caerulescens, two model species among metal accumulating taxa, we summarize and reflect past taxonomy and systematics of Arabidopsis and Noccaea and provide a modern synthesis of taxonomic, systematic and evolutionary perspectives. The same is presented for several species of Eutrema s. l. and Schrenkiella recently appeared as models for studying stress tolerance in plants and widely known under the name Thellungiella.

摘要

分类学和系统学为任何生物学研究提供了名称和进化框架。没有这些名称,就无法了解进化过程产生特定分类群的生物学背景:密切相关的亲属和姐妹种(杂交),更远缘的分类群(祖先状态),例如。这不仅适用于研究项目关注的单个物种,也适用于其亲属,这些亲属可能会被选择用于比较方法和未来的研究。然而,分类学和系统学知识在生物学学科中很少被充分探索和考虑。人们会期望像 Noccaea、Arabidopsis、Schrenkiella 和 Eutrema(Thellungiella)这样的模式生物的情况会更加发达。然而,我们看到的情况正好相反。使用两种金属积累分类群中的模式物种 Arabidopsis halleri 和 Noccaea caerulescens,我们总结和反映了 Arabidopsis 和 Noccaea 的过去分类学和系统学,并提供了分类学、系统学和进化观点的现代综合。同样的情况也适用于最近作为研究植物胁迫耐受模型出现的几种 Eutrema s. l. 和 Schrenkiella 物种,它们在广为人知的名称 Thellungiella 下被广泛知晓。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/389c/3728732/768730a50613/fpls-04-00267-g0001.jpg

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