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使用电子自旋回波包络调制(ESEEM)光谱法测量非血红素 Fe(II)/α-酮戊二酸依赖性牛磺酸羟化酶(TauD)活性位点中天冬氨酸的取向。

Measuring the orientation of taurine in the active site of the non-heme Fe(II)/α-ketoglutarate-dependent taurine hydroxylase (TauD) using electron spin echo envelope modulation (ESEEM) spectroscopy.

机构信息

Department of Chemistry, ‡Department of Microbiology and Molecular Genetics, and Department of Biochemistry and Molecular Biology, Michigan State University , East Lansing, Michigan, 48824.

出版信息

J Phys Chem B. 2013 Sep 12;117(36):10384-94. doi: 10.1021/jp404743d. Epub 2013 Aug 29.

Abstract

The position and orientation of taurine near the non-heme Fe(II) center of the α-ketoglutarate (α-KG)-dependent taurine hydroxylase (TauD) was measured using Electron Spin Echo Envelope Modulation (ESEEM) spectroscopy. TauD solutions containing Fe(II), α-KG, and natural abundance taurine or specifically deuterated taurine were prepared anaerobically and treated with nitric oxide (NO) to make an S = 3/2 {FeNO}(7) complex that is suitable for robust analysis with EPR spectroscopy. Using ratios of ESEEM spectra collected for TauD samples having natural abundance taurine or deuterated taurine, (1)H and (14)N modulations were filtered out of the spectra and interactions with specific deuterons on taurine could be studied separately. The Hamiltonian parameters used to calculate the amplitudes and line shapes of frequency spectra containing isolated deuterium ESEEM were obtained with global optimization algorithms. Additional statistical analysis was performed to validate the interpretation of the optimized parameters. The strongest (2)H hyperfine coupling was to a deuteron on the C1 position of taurine and was characterized by an effective dipolar distance of 3.90 ± 0.25 Å from the {FeNO}(7) paramagnetic center. The principal axes of this C1-(2)H hyperfine coupling and nuclear quadrupole interaction tensors were found to make angles of 26 ± 5 and 52 ± 17°, respectively, with the principal axis of the {FeNO}(7) zero-field splitting tensor. These results are discussed within the context of the orientation of substrate taurine prior to the initiation of hydrogen abstraction.

摘要

使用电子自旋回波包络调制(ESEEM)光谱技术测量了牛磺酸在α-酮戊二酸(α-KG)依赖性牛磺酸羟化酶(TauD)中非血红素 Fe(II)中心附近的位置和取向。TauD 溶液含有 Fe(II)、α-KG 和天然丰度的牛磺酸或特定氘代牛磺酸,在无氧条件下制备,并与一氧化氮(NO)处理以制备适合于电子顺磁共振(EPR)光谱进行稳健分析的 S = 3/2 {FeNO}(7)配合物。使用含有天然丰度牛磺酸或氘代牛磺酸的 TauD 样品收集的 ESEEM 光谱的比值,(1)H 和(14)N 调制从光谱中过滤出来,可以分别研究与牛磺酸上特定氘原子的相互作用。用于计算包含孤立氘 ESEEM 的频率光谱的幅度和线形状的哈密顿参数是通过全局优化算法获得的。进行了额外的统计分析以验证优化参数的解释。最强的(2)H 超精细耦合是与牛磺酸的 C1 位置上的氘原子,其有效偶极距离为 3.90 ± 0.25 Å,来自 {FeNO}(7)顺磁中心。该 C1-(2)H 超精细耦合和核四极相互作用张量的主轴被发现与 {FeNO}(7)零场分裂张量的主轴分别形成 26 ± 5 和 52 ± 17°的角度。这些结果在讨论底物牛磺酸在开始氢提取之前的取向时进行了讨论。

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本文引用的文献

1
Avogadro: an advanced semantic chemical editor, visualization, and analysis platform.
J Cheminform. 2012 Aug 13;4(1):17. doi: 10.1186/1758-2946-4-17.
2
Structural and mechanistic comparisons of the metal-binding members of the vicinal oxygen chelate (VOC) superfamily.
J Inorg Biochem. 2011 Oct;105(10):1259-72. doi: 10.1016/j.jinorgbio.2011.06.006. Epub 2011 Jul 4.
3
Role of metal-oxo complexes in the cleavage of C-H bonds.
Chem Soc Rev. 2011 Apr;40(4):1870-4. doi: 10.1039/c0cs00165a. Epub 2011 Mar 1.
4
Analysis of reaction channels for alkane hydroxylation by nonheme iron(IV)-oxo complexes.
Angew Chem Int Ed Engl. 2010 Aug 2;49(33):5717-20. doi: 10.1002/anie.201001850.
6
General and efficient simulation of pulse EPR spectra.
Phys Chem Chem Phys. 2009 Aug 21;11(31):6614-25. doi: 10.1039/b907277b. Epub 2009 Jul 2.
9
Quantum chemical studies of C-H activation reactions by high-valent nonheme iron centers.
Curr Opin Chem Biol. 2009 Feb;13(1):89-98. doi: 10.1016/j.cbpa.2009.02.007. Epub 2009 Mar 9.
10
Fe(II)/alpha-ketoglutarate hydroxylases involved in nucleobase, nucleoside, nucleotide, and chromatin metabolism.
Dalton Trans. 2008 Oct 14(38):5132-42. doi: 10.1039/b803512a. Epub 2008 Jun 27.

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