Department of Chemical Physiology and The Skaggs Institute for Chemical Biology, The Scripps Research Institute , 10550 North Torrey Pines Road, La Jolla, California 92037, United States.
Inorg Chem. 2017 Nov 6;56(21):13382-13389. doi: 10.1021/acs.inorgchem.7b02113. Epub 2017 Sep 29.
The iron(II)- and 2-(oxo)glutarate-dependent (Fe/2OG) oxygenases catalyze an array of challenging transformations via a common iron(IV)-oxo (ferryl) intermediate, which in most cases abstracts hydrogen (H•) from an aliphatic carbon of the substrate. Although it has been shown that the relative disposition of the Fe-O and C-H bonds can control the rate of H• abstraction and fate of the resultant substrate radical, there remains a paucity of structural information on the actual ferryl states, owing to their high reactivity. We demonstrate here that the stable vanadyl ion [(V-oxo)] binds along with 2OG or its decarboxylation product, succinate, in the active site of two different Fe/2OG enzymes to faithfully mimic their transient ferryl states. Both ferryl and vanadyl complexes of the Fe/2OG halogenase, SyrB2, remain stably bound to its carrier protein substrate (l-aminoacyl-S-SyrB1), whereas the corresponding complexes harboring transition metals (Fe, Mn) in lower oxidation states dissociate. In the well-studied taurine:2OG dioxygenase (TauD), the disposition of the substrate C-H bond relative to the vanadyl ion defined by pulse electron paramagnetic resonance methods is consistent with the crystal structure of the reactant complex and computational models of the ferryl state. Vanadyl substitution may thus afford access to structural details of the key ferryl intermediates in this important enzyme class.
铁(II)和 2-(氧代)戊二酸依赖性(Fe/2OG)加氧酶通过常见的铁(IV)-氧(双氧)中间物催化一系列具有挑战性的转化,该中间物在大多数情况下从底物的脂肪族碳原子上提取氢(H•)。尽管已经表明 Fe-O 和 C-H 键的相对位置可以控制 H•提取的速率和生成的底物自由基的命运,但由于其高反应性,实际上对于双氧状态的结构信息仍然很少。我们在这里证明,稳定的钒酰离子 [(V-oxo)] 与 2OG 或其脱羧产物琥珀酸一起结合在两种不同的 Fe/2OG 酶的活性部位中,以忠实地模拟它们的瞬态双氧状态。Fe/2OG 卤代酶 SyrB2 的双氧和钒酰配合物仍然稳定地结合到其载体蛋白底物(l-氨酰-S-SyrB1)上,而含有较低氧化态过渡金属(Fe、Mn)的相应配合物则会解离。在研究充分的牛磺酸:2OG 加氧酶(TauD)中,脉冲电子顺磁共振方法定义的底物 C-H 键相对于钒酰离子的位置与反应复合物的晶体结构和双氧状态的计算模型一致。因此,钒取代可能提供了对该重要酶类中关键双氧中间体的结构细节的了解。