• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

生物分子力-伸长曲线中的锯齿形图案:一种平衡统计力学理论。

Sawtooth patterns in force-extension curves of biomolecules: an equilibrium-statistical-mechanics theory.

作者信息

Prados A, Carpio A, Bonilla L L

机构信息

Física Teórica, Universidad de Sevilla, Apartado de Correos 1065, E-41080 Sevilla, Spain.

出版信息

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Jul;88(1):012704. doi: 10.1103/PhysRevE.88.012704. Epub 2013 Jul 8.

DOI:10.1103/PhysRevE.88.012704
PMID:23944489
Abstract

We analyze the force-extension curve for a general class of systems, which are described at the mesoscopic level by a free energy depending on the extension of its components. Similarly to what is done in real experiments, the total length of the system is the controlled parameter. This imposes a global constraint in the minimization procedure leading to the equilibrium values of the extensions. As a consequence, the force-extension curve has multiple branches in a certain range of forces. The stability of these branches is governed by the free energy: there are a series of first-order phase transitions at certain values of the total length, in which the free energy itself is continuous but its first derivative, the force, has a finite jump. This behavior is completely similar to that observed in real experiments with biomolecules like proteins and with other complex systems.

摘要

我们分析了一类一般系统的力-伸长曲线,这类系统在介观层面由依赖于其组分伸长的自由能来描述。与实际实验中所做的类似,系统的总长度是控制参数。这在导致伸长平衡值的最小化过程中施加了一个全局约束。因此,力-伸长曲线在一定力的范围内有多个分支。这些分支的稳定性由自由能决定:在总长度的某些值处存在一系列一阶相变,其中自由能本身是连续的但其一阶导数,即力,有一个有限的跃变。这种行为与在蛋白质等生物分子以及其他复杂系统的实际实验中观察到的行为完全相似。

相似文献

1
Sawtooth patterns in force-extension curves of biomolecules: an equilibrium-statistical-mechanics theory.生物分子力-伸长曲线中的锯齿形图案:一种平衡统计力学理论。
Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Jul;88(1):012704. doi: 10.1103/PhysRevE.88.012704. Epub 2013 Jul 8.
2
Theory of force-extension curves for modular proteins and DNA hairpins.模块化蛋白质和DNA发夹的力-伸长曲线理论
Phys Rev E Stat Nonlin Soft Matter Phys. 2015 May;91(5):052712. doi: 10.1103/PhysRevE.91.052712. Epub 2015 May 26.
3
Spin-oscillator model for the unzipping of biomolecules by mechanical force.用于通过机械力解开生物分子的自旋振荡器模型。
Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Aug;86(2 Pt 1):021919. doi: 10.1103/PhysRevE.86.021919. Epub 2012 Aug 21.
4
Mechanics, thermodynamics, and kinetics of ligand binding to biopolymers.配体与生物聚合物结合的力学、热力学和动力学
PLoS One. 2017 Apr 5;12(4):e0174830. doi: 10.1371/journal.pone.0174830. eCollection 2017.
5
Force distribution in a semiflexible loop.半柔性环中的力分布。
Phys Rev E. 2016 Apr;93:043315. doi: 10.1103/PhysRevE.93.043315. Epub 2016 Apr 18.
6
Quantum mechanics based force field for carbon (QMFF-Cx) validated to reproduce the mechanical and thermodynamics properties of graphite.基于量子力学的碳力场 (QMFF-Cx) 经过验证,可再现石墨的力学和热力学性质。
J Chem Phys. 2010 Oct 7;133(13):134114. doi: 10.1063/1.3456543.
7
Model for stretching elastic biopolymers which exhibit conformational transformations.用于拉伸表现出构象转变的弹性生物聚合物的模型。
Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Feb;75(2 Pt 1):021907. doi: 10.1103/PhysRevE.75.021907. Epub 2007 Feb 15.
8
Intrinsic and force-generated cooperativity in a theory of DNA-bending proteins.DNA弯曲蛋白理论中的内在协同性与力产生协同性。
Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Nov;82(5 Pt 1):051906. doi: 10.1103/PhysRevE.82.051906. Epub 2010 Nov 3.
9
Free energy of twisted semiflexible polymers.扭曲半柔性聚合物的自由能。
Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Jun;77(6 Pt 1):061903. doi: 10.1103/PhysRevE.77.061903. Epub 2008 Jun 4.
10
Simulated scaling method for localized enhanced sampling and simultaneous "alchemical" free energy simulations: a general method for molecular mechanical, quantum mechanical, and quantum mechanical/molecular mechanical simulations.用于局部增强采样和同步“炼金术”自由能模拟的模拟标度方法:一种用于分子力学、量子力学以及量子力学/分子力学模拟的通用方法。
J Chem Phys. 2007 Jan 14;126(2):024106. doi: 10.1063/1.2424700.

引用本文的文献

1
Nonlinear Charge Transport and Excitable Phenomena in Semiconductor Superlattices.半导体超晶格中的非线性电荷输运与激发现象
Entropy (Basel). 2024 Aug 8;26(8):672. doi: 10.3390/e26080672.
2
The fluidic memristor as a collective phenomenon in elastohydrodynamic networks.流变体忆阻器作为弹性流体动力网络中的集体现象。
Nat Commun. 2024 Apr 10;15(1):3121. doi: 10.1038/s41467-024-47110-0.