Authors' Affiliations: Department of Molecular Medicine, The University of Texas Health Science Center, San Antonio, Texas; Department of Radiation Oncology, Department of Molecular Virology, Immunology and Medical Genetics; Comprehensive Cancer Center; Department of Pathology, College of Medicine; Department of Surgery, Division of Thoracic Surgery, The Ohio State University, Columbus, Ohio; and Yanbian University College of Medicine, Ji Lin, China.
Clin Cancer Res. 2013 Oct 1;19(19):5423-33. doi: 10.1158/1078-0432.CCR-13-0320. Epub 2013 Aug 14.
We conducted genome-wide miRNA-sequencing (miRNA-seq) in primary cancer tissue from patients of lung adenocarcinoma to identify markers for the presence of lymph node metastasis.
Markers for lymph node metastasis identified by sequencing were validated in a separate cohort using quantitative PCR. After additional validation in the The Cancer Genome Atlas (TCGA) dataset, functional characterization studies were conducted in vitro.
MiR-31 was upregulated in lung adenocarcinoma tissues from patients with lymph node metastases compared with those without lymph node metastases. We confirmed miR-31 to be upregulated in lymph node-positive patients in a separate patient cohort (P = 0.009, t test), and to be expressed at higher levels in adenocarcinoma tissue than in matched normal adjacent lung tissues (P < 0.0001, paired t test). MiR-31 was then validated as a marker for lymph node metastasis in an external validation cohort of 233 lung adenocarcinoma cases of the TCGA (P = 0.031, t test). In vitro functional assays showed that miR-31 increases cell migration, invasion, and proliferation in an ERK1/2 signaling-dependent manner. Notably, miR-31 was a significant predictor of survival in a multivariate cox regression model even when controlling for cancer staging. Exploratory in silico analysis showed that low expression of miR-31 is associated with excellent survival for T2N0 patients.
We applied miRNA-seq to study microRNomes in lung adenocarcinoma tissue samples for the first time and potentially identified a miRNA predicting the presence of lymph node metastasis and survival outcomes in patients of lung adenocarcinoma.
我们对肺腺癌患者的原发癌组织进行了全基因组 miRNA 测序(miRNA-seq),以鉴定用于预测淋巴结转移的标志物。
通过测序鉴定出的淋巴结转移标志物在另一个队列中使用定量 PCR 进行验证。在癌症基因组图谱(TCGA)数据集进行了进一步验证后,进行了体外功能特征研究。
与无淋巴结转移的患者相比,有淋巴结转移的肺腺癌组织中 miR-31 上调。我们在另一个患者队列中证实 miR-31 在淋巴结阳性患者中上调(P=0.009,t 检验),并且在腺癌组织中的表达水平高于匹配的正常相邻肺组织(P<0.0001,配对 t 检验)。然后,miR-31 在 TCGA 的 233 例肺腺癌外部验证队列中被验证为淋巴结转移的标志物(P=0.031,t 检验)。体外功能测定表明,miR-31 通过 ERK1/2 信号依赖性方式增加细胞迁移、侵袭和增殖。值得注意的是,即使在控制癌症分期的情况下,miR-31 在多变量 cox 回归模型中也是生存的重要预测因子。探索性的计算机分析表明,miR-31 的低表达与 T2N0 患者的良好生存相关。
我们首次应用 miRNA-seq 研究肺腺癌组织样本中的 microRNomes,并可能鉴定出一种 miRNA 可预测肺腺癌患者的淋巴结转移和生存结局。