Departamento de Ingeniería Genética de Plantas, Centro de Investigación y de Estudios Avanzados, Unidad Irapuato, Irapuato, Guanajuato, México.
PLoS One. 2013 Aug 8;8(8):e72729. doi: 10.1371/journal.pone.0072729. eCollection 2013.
RING finger E3 ligases are components of the ubiquitin proteasome system (UPS) that mediate the transfer of ubiquitin to substrates. Single-subunit RING finger E3s binds the E2 ubiquitin-conjugating enzyme and contains recognition sequences for the substrate within the same polypeptide. Here we describe the characterization of a class of RING finger E3 ligases that is conserved among eukaryotes. This class encodes a RING-H2 domain related in sequence to the ATL RING-H2 domain, another class of E3 ligases, and a C2/C2 zing finger at the amino-terminus, formerly described as BZF. In viridiplantae (green algae and land plants), we designed this family as BTL for BZF ATLs. BTLs are putative orthologs of the mammalian Rabring7/BCA2 RING-H2 E3s that have expanded in angiosperms. They are found in numbers ranging from three to thirty-one, which is in contrast to the one to three members normally found in animals, fungi, and protists. Furthermore, the number of sequence LOGOs generated in angiosperms is four times greater than that in other eukaryotes. In contrast to ATLs, which show expansion by tandem duplication, tandemly duplicated BTLs are scarce. The mode of action of Rabring7/BCA2 and BTLs may be similar since both the Rabring7/BCA2 BZF and the ath|BTL4 BZF are likely to mediate the binding of ubiquitin. This study introduces valuable information on the evolution and domain structure of the Rabring7/BCA2/BTL class of E3 ligases which may be important for core eukaryotic genes.
RING 指 E3 连接酶是泛素蛋白酶体系统 (UPS) 的组成部分,介导泛素向底物的转移。单亚基 RING 指 E3 连接酶与 E2 泛素缀合酶结合,并在同一多肽中包含底物的识别序列。在这里,我们描述了一类在真核生物中保守的 RING 指 E3 连接酶。这一类编码一个 RING-H2 结构域,其序列与 ATL RING-H2 结构域相关,另一个 E3 连接酶类,以及氨基末端的 C2/C2 锌指,以前被描述为 BZF。在 Viridiplantae(绿藻和陆地植物)中,我们将这个家族设计为 BZF ATLs 的 BTL。BTLs 是哺乳动物 Rabring7/BCA2 RING-H2 E3s 的假定同源物,在被子植物中已经扩张。它们的数量从三个到三十一个不等,这与动物、真菌和原生动物中通常发现的一到三个成员形成对比。此外,被子植物中生成的序列 LOGO 数量是其他真核生物的四倍。与通过串联重复扩张的 ATLs 不同,串联重复的 BTLs 很少。Rabring7/BCA2 和 BTLs 的作用方式可能相似,因为 Rabring7/BCA2 的 BZF 和 ath|BTL4 的 BZF 都可能介导泛素的结合。这项研究介绍了关于 Rabring7/BCA2/BTL 类 E3 连接酶的进化和结构域的有价值的信息,这对于核心真核基因可能很重要。