Section Computational Science, Faculty of Science, University of Amsterdam, Amsterdam, The Netherlands.
PLoS One. 2013 Aug 14;8(8):e71287. doi: 10.1371/journal.pone.0071287. eCollection 2013.
A major challenge in coral biology is to find the most adequate and phylogenetically informative characters that allow for distinction of closely related coral species. Therefore, data on corallite morphology and genetic data are often combined to increase phylogenetic resolution. In this study, we address the question to which degree genetic data and quantitative information on overall coral colony morphologies identify similar groupings within closely related morphospecies of the Caribbean coral genus Madracis. Such comparison of phylogenies based on colony morphology and genetic data will also provide insight into the degree to which genotype and phenotype overlap. We have measured morphological features of three closely related Caribbean coral species of the genus Madracis (M. formosa, M. decactis and M. carmabi). Morphological differences were then compared with phylogenies of the same species based on two nuclear DNA markers, i.e. ATPSα and SRP54. Our analysis showed that phylogenetic trees based on (macroscopical) morphological properties and phylogenetic trees based on DNA markers ATPSα and SRP54 are partially similar indicating that morphological characteristics at the colony level provide another axis, in addition to commonly used features such as corallite morphology and ecological information, to delineate genetically different coral species. We discuss this new method that allows systematic quantitative comparison between morphological characteristics of entire colonies and genetic data.
珊瑚生物学的一个主要挑战是找到最合适和最具系统发育信息量的特征,以便区分密切相关的珊瑚物种。因此,通常将珊瑚虫形态学数据和遗传数据结合起来,以提高系统发育分辨率。在这项研究中,我们探讨了遗传数据和整体珊瑚群体形态的定量信息在多大程度上可以识别加勒比珊瑚属 Madracis 的密切相关形态种内的相似分组。基于珊瑚形态和遗传数据的系统发育的这种比较还将深入了解基因型和表型重叠的程度。我们已经测量了加勒比珊瑚属 Madracis 三种密切相关物种(M. formosa、M. decactis 和 M. carmabi)的形态特征。然后,将形态差异与基于两个核 DNA 标记(ATPSα 和 SRP54)的相同物种的系统发育进行了比较。我们的分析表明,基于(宏观)形态特征的系统发育树和基于 DNA 标记 ATPSα 和 SRP54 的系统发育树部分相似,表明在群体水平上的形态特征除了通常使用的特征(如珊瑚虫形态和生态信息)之外,还提供了另一个轴,用于描绘遗传上不同的珊瑚物种。我们讨论了这种新方法,它允许对整个群体的形态特征与遗传数据之间进行系统的定量比较。