快速生长细菌嗜盐弧菌DSMZ 759菌株的基因组草图序列
Draft Genome Sequence of the Fast-Growing Bacterium Vibrio natriegens Strain DSMZ 759.
作者信息
Maida Isabel, Bosi Emanuele, Perrin Elena, Papaleo Maria Cristiana, Orlandini Valerio, Fondi Marco, Fani Renato, Wiegel Juergen, Bianconi Giovanna, Canganella Francesco
机构信息
Laboratory of Microbial and Molecular Evolution, Department of Biology, University of Florence, Florence, Italy.
出版信息
Genome Announc. 2013 Aug 22;1(4):e00648-13. doi: 10.1128/genomeA.00648-13.
Abstract
Vibrio natriegens is a Gram-negative bacterium known for its extremely short doubling time. Here we present the annotated draft genome sequence of Vibrio natriegens strain DSMZ 759, with the aim of providing insights about its high growth rate.
摘要
嗜盐栖热袍菌是一种革兰氏阴性菌，以其极短的倍增时间而闻名。在此，我们展示了嗜盐栖热袍菌DSMZ 759菌株的注释草图基因组序列，旨在深入了解其高生长速率。
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本文引用的文献
1
SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data.SolexaQA：快速评估 Illumina 第二代测序数据的质量。
BMC Bioinformatics. 2010 Sep 27;11:485. doi: 10.1186/1471-2105-11-485.
2
ABySS: a parallel assembler for short read sequence data.ABySS：一种用于短读长序列数据的并行汇编器。
Genome Res. 2009 Jun;19(6):1117-23. doi: 10.1101/gr.089532.108. Epub 2009 Feb 27.
3
The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
4
Identifying bacterial genes and endosymbiont DNA with Glimmer.使用Glimmer识别细菌基因和内共生体DNA。
Bioinformatics. 2007 Mar 15;23(6):673-9. doi: 10.1093/bioinformatics/btm009. Epub 2007 Jan 19.
5
Pseudomonas natriegens, a marine bacterium with a generation time of less than 10 minutes.嗜盐栖热假单胞菌，一种世代时间少于10分钟的海洋细菌。
J Bacteriol. 1962 Apr;83(4):736-7. doi: 10.1128/jb.83.4.736-737.1962.
6
Some observations on the physiology of Pseudomonas natriegens nov. spec.关于新种纳氏假单胞菌生理学的一些观察
Antonie Van Leeuwenhoek. 1961;27:121-8. doi: 10.1007/BF02538432.
7
rRNA promoter activity in the fast-growing bacterium Vibrio natriegens.快速生长的细菌——嗜盐栖热袍菌中的rRNA启动子活性。
J Bacteriol. 2002 Mar;184(5):1349-58. doi: 10.1128/JB.184.5.1349-1358.2002.
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