相似文献
1
Separation of the largest eigenvalues in eigenanalysis of genotype data from discrete subpopulations.
Theor Popul Biol. 2013 Nov;89:34-43. doi: 10.1016/j.tpb.2013.08.004. Epub 2013 Aug 20.
2
Improved eigenanalysis of discrete subpopulations and admixture using the minimum average partial test.
Hum Hered. 2012;73(2):73-83. doi: 10.1159/000335899. Epub 2012 Mar 20.
3
A general population-genetic model for the production by population structure of spurious genotype-phenotype associations in discrete, admixed or spatially distributed populations.
Genetics. 2006 Jul;173(3):1665-78. doi: 10.1534/genetics.105.055335. Epub 2006 Apr 2.
4
Control of population stratification by correlation-selected principal components.
Biometrics. 2011 Sep;67(3):967-74. doi: 10.1111/j.1541-0420.2010.01520.x. Epub 2010 Dec 6.
5
Accurate inference of subtle population structure (and other genetic discontinuities) using principal coordinates.
PLoS One. 2009;4(1):e4269. doi: 10.1371/journal.pone.0004269. Epub 2009 Jan 27.
6
Theoretical analysis of principal components in an umbrella model of intraspecific evolution.
Theor Popul Biol. 2022 Dec;148:11-21. doi: 10.1016/j.tpb.2022.08.002. Epub 2022 Sep 16.
7
PCA-based population structure inference with generic clustering algorithms.
BMC Bioinformatics. 2009 Jan 30;10 Suppl 1(Suppl 1):S73. doi: 10.1186/1471-2105-10-S1-S73.
8
Eigenanalysis of SNP data with an identity by descent interpretation.
Theor Popul Biol. 2016 Feb;107:65-76. doi: 10.1016/j.tpb.2015.09.004. Epub 2015 Oct 23.
9
Nonparametric approaches for population structure analysis.
Hum Genomics. 2018 May 9;12(1):25. doi: 10.1186/s40246-018-0156-4.
10
Detecting hierarchical levels of connectivity in a population of Acacia tortilis at the northern edge of the species' global distribution: Combining classical population genetics and network analyses.
PLoS One. 2018 Apr 12;13(4):e0194901. doi: 10.1371/journal.pone.0194901. eCollection 2018.
引用本文的文献
1
Discovering Loci for Breeding Prospective and Phenology in Wheat Mediterranean Landraces by Environmental and eigenGWAS.
Int J Mol Sci. 2023 Jan 15;24(2):1700. doi: 10.3390/ijms24021700.
2
A spectral theory for Wright's inbreeding coefficients and related quantities.
PLoS Genet. 2021 Jul 19;17(7):e1009665. doi: 10.1371/journal.pgen.1009665. eCollection 2021 Jul.
3
Labelling Selective Sweeps Used in Durum Wheat Breeding from a Diverse and Structured Panel of Landraces and Cultivars.
Biology (Basel). 2021 Mar 24;10(4):258. doi: 10.3390/biology10040258.
4
Network-based hierarchical population structure analysis for large genomic data sets.
Genome Res. 2019 Dec;29(12):2020-2033. doi: 10.1101/gr.250092.119. Epub 2019 Nov 6.
5
Detecting Adaptive Differentiation in Structured Populations with Genomic Data and Common Gardens.
Genetics. 2019 Mar;211(3):989-1004. doi: 10.1534/genetics.118.301786. Epub 2019 Jan 24.
6
Genomic analysis reveals genes affecting distinct phenotypes among different Chinese and western pig breeds.
Sci Rep. 2018 Sep 6;8(1):13352. doi: 10.1038/s41598-018-31802-x.
7
A Genomic Reference Panel for .
G3 (Bethesda). 2018 Mar 28;8(4):1335-1346. doi: 10.1534/g3.117.300487.
8
Human ancestry correlates with language and reveals that race is not an objective genomic classifier.
Sci Rep. 2017 May 8;7(1):1572. doi: 10.1038/s41598-017-01837-7.
9
Accounting for Sampling Error in Genetic Eigenvalues Using Random Matrix Theory.
Genetics. 2017 Jul;206(3):1271-1284. doi: 10.1534/genetics.116.198606. Epub 2017 May 5.
10
EigenGWAS: finding loci under selection through genome-wide association studies of eigenvectors in structured populations.
Heredity (Edinb). 2016 Jul;117(1):51-61. doi: 10.1038/hdy.2016.25. Epub 2016 May 4.
本文引用的文献
1
Unexpected relationships and inbreeding in HapMap phase III populations.
PLoS One. 2012;7(11):e49575. doi: 10.1371/journal.pone.0049575. Epub 2012 Nov 19.
2
Improved eigenanalysis of discrete subpopulations and admixture using the minimum average partial test.
Hum Hered. 2012;73(2):73-83. doi: 10.1159/000335899. Epub 2012 Mar 20.
3
On identifying the optimal number of population clusters via the deviance information criterion.
PLoS One. 2011;6(6):e21014. doi: 10.1371/journal.pone.0021014. Epub 2011 Jun 28.
4
Inference of unexpected genetic relatedness among individuals in HapMap Phase III.
Am J Hum Genet. 2010 Oct 8;87(4):457-64. doi: 10.1016/j.ajhg.2010.08.014.
5
Analysis of population structure: a unifying framework and novel methods based on sparse factor analysis.
PLoS Genet. 2010 Sep 16;6(9):e1001117. doi: 10.1371/journal.pgen.1001117.
6
The site-frequency spectrum of linked sites.
Bull Math Biol. 2011 Mar;73(3):459-94. doi: 10.1007/s11538-010-9534-3. Epub 2010 Mar 27.
7
Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data.
PLoS Genet. 2009 Oct;5(10):e1000695. doi: 10.1371/journal.pgen.1000695. Epub 2009 Oct 23.
8
A genealogical interpretation of principal components analysis.
PLoS Genet. 2009 Oct;5(10):e1000686. doi: 10.1371/journal.pgen.1000686. Epub 2009 Oct 16.
9
Fast model-based estimation of ancestry in unrelated individuals.
Genome Res. 2009 Sep;19(9):1655-64. doi: 10.1101/gr.094052.109. Epub 2009 Jul 31.
10
Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds.
Science. 2009 Apr 24;324(5926):528-32. doi: 10.1126/science.1167936.
Zotero 插件