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奶牛泌乳起始期乳腺基因表达谱分析。

Bovine mammary gene expression profiling during the onset of lactation.

机构信息

Shandong Provincial Key Laboratory of Ruminant Nutritional Physiology, College of Animal Science and Veterinary Medicine, Shandong Agricultural University, Taian, China.

出版信息

PLoS One. 2013 Aug 21;8(8):e70393. doi: 10.1371/journal.pone.0070393. eCollection 2013.

DOI:10.1371/journal.pone.0070393
PMID:23990904
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3749150/
Abstract

BACKGROUND

Lactogenesis includes two stages. Stage I begins a few weeks before parturition. Stage II is initiated around the time of parturition and extends for several days afterwards.

METHODOLOGY/PRINCIPAL FINDINGS: To better understand the molecular events underlying these changes, genome-wide gene expression profiling was conducted using digital gene expression (DGE) on bovine mammary tissue at three time points (on approximately day 35 before parturition (-35 d), day 7 before parturition (-7 d) and day 3 after parturition (+3 d)). Approximately 6.2 million (M), 5.8 million (M) and 6.1 million (M) 21-nt cDNA tags were sequenced in the three cDNA libraries (-35 d, -7 d and +3 d), respectively. After aligning to the reference sequences, the three cDNA libraries included 8,662, 8,363 and 8,359 genes, respectively. With a fold change cutoff criteria of ≥ 2 or ≤-2 and a false discovery rate (FDR) of ≤ 0.001, a total of 812 genes were significantly differentially expressed at -7 d compared with -35 d (stage I). Gene ontology analysis showed that those significantly differentially expressed genes were mainly associated with cell cycle, lipid metabolism, immune response and biological adhesion. A total of 1,189 genes were significantly differentially expressed at +3 d compared with -7 d (stage II), and these genes were mainly associated with the immune response and cell cycle. Moreover, there were 1,672 genes significantly differentially expressed at +3 d compared with -35 d. Gene ontology analysis showed that the main differentially expressed genes were those associated with metabolic processes.

CONCLUSIONS

The results suggest that the mammary gland begins to lactate not only by a gain of function but also by a broad suppression of function to effectively push most of the cell's resources towards lactation.

摘要

背景

泌乳包括两个阶段。第一阶段在分娩前几周开始。第二阶段在分娩时开始,并持续数天。

方法/主要发现:为了更好地了解这些变化背后的分子事件,我们使用数字基因表达(DGE)在牛乳腺组织上进行了全基因组基因表达谱分析,在三个时间点(大约在分娩前 35 天(-35d)、分娩前 7 天(-7d)和分娩后 3 天(+3d))。在三个 cDNA 文库(-35d、-7d 和+3d)中分别对约 620 万(M)、580 万(M)和 610 万(M)的 21-nt cDNA 标签进行了测序。在将这些标签与参考序列对齐后,三个 cDNA 文库分别包含 8662、8363 和 8359 个基因。使用 fold change 截止标准为≥2 或≤-2,错误发现率(FDR)≤0.001,共有 812 个基因在-7d 时与-35d(第一阶段)相比差异显著表达。GO 分析表明,这些差异显著表达的基因主要与细胞周期、脂质代谢、免疫反应和生物粘附有关。在+3d 时,与-7d(第二阶段)相比,共有 1189 个基因差异显著表达,这些基因主要与免疫反应和细胞周期有关。此外,与-35d 相比,在+3d 时还有 1672 个基因差异显著表达。GO 分析表明,主要差异表达的基因是与代谢过程相关的基因。

结论

研究结果表明,乳腺不仅通过功能获得,而且通过广泛抑制功能开始泌乳,有效地将细胞的大部分资源推向泌乳。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c5d7/3749150/0dbfc5661cb7/pone.0070393.g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c5d7/3749150/595394e48c79/pone.0070393.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c5d7/3749150/c85513ea2c21/pone.0070393.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c5d7/3749150/9d421218674d/pone.0070393.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c5d7/3749150/9f6ce85c865a/pone.0070393.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c5d7/3749150/98b6b45de06c/pone.0070393.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c5d7/3749150/0dbfc5661cb7/pone.0070393.g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c5d7/3749150/595394e48c79/pone.0070393.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c5d7/3749150/c85513ea2c21/pone.0070393.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c5d7/3749150/9d421218674d/pone.0070393.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c5d7/3749150/9f6ce85c865a/pone.0070393.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c5d7/3749150/98b6b45de06c/pone.0070393.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c5d7/3749150/0dbfc5661cb7/pone.0070393.g006.jpg

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