Laboratory of Membrane Biochemistry and Biophysics, NIAAA, NIH, Bethesda, Maryland, 20892.
Proteins. 2014 Mar;82(3):452-65. doi: 10.1002/prot.24411. Epub 2013 Oct 17.
The global fold of human cannabinoid type 2 (CB2 ) receptor in the agonist-bound active state in lipid bilayers was investigated by solid-state (13)C- and (15)N magic-angle spinning (MAS) NMR, in combination with chemical-shift prediction from a structural model of the receptor obtained by microsecond-long molecular dynamics (MD) simulations. Uniformly (13)C- and (15)N-labeled CB2 receptor was expressed in milligram quantities by bacterial fermentation, purified, and functionally reconstituted into liposomes. (13)C MAS NMR spectra were recorded without sensitivity enhancement for direct comparison of Cα, Cβ, and C=O bands of superimposed resonances with predictions from protein structures generated by MD. The experimental NMR spectra matched the calculated spectra reasonably well indicating agreement of the global fold of the protein between experiment and simulations. In particular, the (13) C chemical shift distribution of Cα resonances was shown to be very sensitive to both the primary amino acid sequence and the secondary structure of CB2. Thus the shape of the Cα band can be used as an indicator of CB2 global fold. The prediction from MD simulations indicated that upon receptor activation a rather limited number of amino acid residues, mainly located in the extracellular Loop 2 and the second half of intracellular Loop 3, change their chemical shifts significantly (≥ 1.5 ppm for carbons and ≥ 5.0 ppm for nitrogens). Simulated two-dimensional (13) Cα(i)-(13)C=O(i) and (13)C=O(i)-(15)NH(i + 1) dipolar-interaction correlation spectra provide guidance for selective amino acid labeling and signal assignment schemes to study the molecular mechanism of activation of CB2 by solid-state MAS NMR.
在双层脂膜中,通过固态 (13)C 和 (15)N 魔角旋转 (MAS) NMR 结合来自通过微秒长的分子动力学 (MD) 模拟获得的受体结构模型的化学位移预测,研究了人类大麻素类型 2 (CB2) 受体在激动剂结合的活性状态下的全球折叠。通过细菌发酵以毫克量表达均匀 (13)C 和 (15)N 标记的 CB2 受体,进行纯化,并将其功能重建到脂质体中。记录了没有灵敏度增强的 (13)C MAS NMR 光谱,以便直接将叠加共振的 Cα、Cβ 和 C=O 带与通过 MD 生成的蛋白质结构的计算光谱进行比较。实验 NMR 光谱与计算光谱相当吻合,表明实验和模拟之间的蛋白质整体折叠一致。特别是,Cα 共振的 (13)C 化学位移分布对 CB2 的一级氨基酸序列和二级结构都非常敏感。因此,Cα 带的形状可用作 CB2 整体折叠的指标。MD 模拟的预测表明,在受体激活后,只有相当数量的氨基酸残基(主要位于细胞外环 2 和细胞内环 3 的后半部分)的化学位移发生显著变化(对于碳原子为≥1.5 ppm,对于氮原子为≥5.0 ppm)。模拟的二维 (13)Cα(i)-(13)C=O(i) 和 (13)C=O(i)-(15)NH(i + 1) 偶极相互作用相关谱为通过固态 MAS NMR 研究 CB2 激活的分子机制提供了选择性氨基酸标记和信号分配方案的指导。