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一种模拟离子通过生物膜进行电迁移的新系统的计算模拟。

Computational simulation of a new system modelling ions electromigration through biological membranes.

作者信息

Alaa Noureddine, Lefraich Hamid

机构信息

Department of Mathematics, Laboratory of Applied Mathematics and Computer Science (LAMAI), Faculty of Science and Technology, Cadi Ayaad University, Abdelkarim Elkhattabi Avenue, Marrakech, Morocco.

出版信息

Theor Biol Med Model. 2013 Sep 5;10:51. doi: 10.1186/1742-4682-10-51.

Abstract

BACKGROUND

The interest in cell membrane has grown drastically for their important role as controllers of biological functions in health and illness. In fact most important physiological processes are intimately related to the transport ability of the membrane, such as cell adhesion, cell signaling and immune defense. Furthermore, ion migration is connected with life-threatening pathologies such as metastases and atherosclerosis. Consequently, a large amount of research is consecrated to this topic. To better understand cell membranes, more accurate models of ionic flux are required and also their computational simulations.

RESULTS

This paper is presenting the numerical simulation of a more general system modelling ion migration through biological membranes. The model includes both the effects of biochemical reaction between ions and fixed charges. The model is a nonlinear coupled system. In the first we describe the mathematical model. To realize the numerical simulation of our model, we proceed by a finite element discretisation and then by choosing an appropriate resolution algorithm to the nonlinearities.

CONCLUSIONS

We give numerical simulations obtained for different popular models of enzymatic reaction which were compared to those obtained in literature on systems of ordinary differential equations. The results obtained show a complete agreement between the two modellings. Furthermore, various numerical experiments are presented to confirm the accuracy, efficiency and stability of the proposed method. In particular, we show that the scheme is unconditionally stable and second-order accurate in space.

摘要

背景

细胞膜作为健康和疾病中生物功能的控制器,其重要作用引发了人们对它的极大兴趣。事实上,大多数重要的生理过程都与膜的运输能力密切相关,如细胞黏附、细胞信号传导和免疫防御。此外,离子迁移与转移和动脉粥样硬化等危及生命的病理状况有关。因此,大量研究致力于这一主题。为了更好地理解细胞膜,需要更精确的离子通量模型及其计算模拟。

结果

本文展示了一个更通用的系统的数值模拟,该系统对离子通过生物膜的迁移进行建模。该模型包括离子与固定电荷之间生化反应的影响。该模型是一个非线性耦合系统。首先,我们描述数学模型。为了实现我们模型的数值模拟,我们先进行有限元离散化,然后为非线性部分选择合适的求解算法。

结论

我们给出了针对不同流行酶促反应模型获得的数值模拟结果,并将其与文献中关于常微分方程组系统的结果进行了比较。所得结果表明两种建模完全一致。此外,还进行了各种数值实验以证实所提方法的准确性、效率和稳定性。特别是,我们表明该格式在空间上是无条件稳定且二阶精确的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/14fe/3848662/957418795315/1742-4682-10-51-1.jpg

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