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通过深度测序技术鉴定和分析广州管圆线虫青年感染者体内的 microRNAs。

Identification and characterisation of microRNAs in young adults of Angiostrongylus cantonensis via a deep-sequencing approach.

机构信息

Institute of Biomedical Sciences, College of Medicine, Chang Gung University, TaoyuanCounty, Taiwan.

出版信息

Mem Inst Oswaldo Cruz. 2013 Sep;108(6):699-706. doi: 10.1590/0074-0276108062013005.

Abstract

Angiostrongylus cantonensis is an important causative agent of eosinophilic meningitis and eosinophilic meningoencephalitis in humans. MicroRNAs (miRNAs) are small non-coding RNAs that participate in a wide range of biological processes. This study employed a deep-sequencing approach to study miRNAs from young adults of A. cantonensis. Based on 16,880,456 high-quality reads, 252 conserved mature miRNAs including 10 antisense miRNAs that belonging to 90 families, together with 10 antisense miRNAs were identified and characterised. Among these sequences, 53 miRNAs from 25 families displayed 50 or more reads. The conserved miRNA families were divided into four groups according to their phylogenetic distribution and a total of nine families without any members showing homology to other nematodes or adult worms were identified. Stem-loop real-time polymerase chain reaction analysis of aca-miR-1-1 and aca-miR-71-1 demonstrated that their level of expression increased dramatically from infective larvae to young adults and then decreased in adult worms, with the male worms exhibiting significantly higher levels of expression than female worms. These findings provide information related to the regulation of gene expression during the growth, development and pathogenesis of young adults of A. cantonensis.

摘要

广州管圆线虫是引起人体嗜酸性脑膜炎和嗜酸性脑膜脑炎的重要病原体。微小 RNA(miRNA)是一种参与广泛生物学过程的小型非编码 RNA。本研究采用深度测序方法研究了广州管圆线虫幼体中的 miRNAs。基于 16,880,456 条高质量读数,鉴定并表征了 252 个保守成熟 miRNA,包括 10 个属于 90 个家族的反义 miRNA,以及 10 个反义 miRNA。在这些序列中,有 53 个 miRNA 来自 25 个家族,其读数在 50 个以上。保守 miRNA 家族根据其系统发育分布分为四个组,总共鉴定到 9 个没有任何成员与其他线虫或成虫同源的家族。茎环实时聚合酶链反应分析表明,aca-miR-1-1 和 aca-miR-71-1 的表达水平从感染性幼虫到幼体显著增加,然后在成虫中降低,雄虫的表达水平明显高于雌虫。这些发现为广州管圆线虫幼体生长、发育和发病机制过程中的基因表达调控提供了信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e96f/3970689/41488f107654/0074-0276-mioc-108-06-699-gf01.jpg

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