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再现北美猪笼草蚊,Wyeomyia smithii 的系统发育和冰期后分布扩张。

Replicate phylogenies and post-glacial range expansion of the pitcher-plant mosquito, Wyeomyia smithii, in North America.

机构信息

Institute of Ecology and Evolution, University of Oregon, Eugene, Oregon, United States of America.

出版信息

PLoS One. 2013 Sep 6;8(9):e72262. doi: 10.1371/journal.pone.0072262. eCollection 2013.

Abstract

Herein we tested the repeatability of phylogenetic inference based on high throughput sequencing by increased taxon sampling using our previously published techniques in the pitcher-plant mosquito, Wyeomyia smithii in North America. We sampled 25 natural populations drawn from different localities nearby 21 previous collection localities and used these new data to construct a second, independent phylogeny, expressly to test the reproducibility of phylogenetic patterns. Comparison of trees between the two data sets based on both maximum parsimony and maximum likelihood with Bayesian posterior probabilities showed close correspondence in the grouping of the most southern populations into clear clades. However, discrepancies emerged, particularly in the middle of W. smithii's current range near the previous maximum extent of the Laurentide Ice Sheet, especially concerning the most recent common ancestor to mountain and northern populations. Combining all 46 populations from both studies into a single maximum parsimony tree and taking into account the post-glacial historical biogeography of associated flora provided an improved picture of W. smithii's range expansion in North America. In a more general sense, we propose that extensive taxon sampling, especially in areas of known geological disruption is key to a comprehensive approach to phylogenetics that leads to biologically meaningful phylogenetic inference.

摘要

在此,我们通过增加分类群采样(利用我们先前在北美的猪笼草蚊 Wyeomyia smithii 中发表的技术)来测试基于高通量测序的系统发育推断的可重复性。我们从 21 个先前采集地点附近的不同地点采集了 25 个自然种群,并使用这些新数据构建了第二个独立的系统发育树,专门用于测试系统发育模式的可再现性。基于最大简约法和最大似然法以及贝叶斯后验概率对这两个数据集的树进行比较,表明在将最南部的种群分组为清晰的分支方面,两组树之间具有密切的对应关系。然而,出现了差异,特别是在劳伦太德冰盖先前最大范围附近的 W. smithii 目前分布范围的中部,特别是在与山脉和北部种群最近的共同祖先方面。将来自两项研究的 46 个种群组合到一个单一的最大简约树上,并考虑到相关植物群的冰河期后历史生物地理学,为 W. smithii 在北美的分布范围扩张提供了更清晰的图像。从更广泛的意义上讲,我们提出广泛的分类群采样,特别是在已知地质干扰的地区,是导致具有生物学意义的系统发育推断的全面系统发育方法的关键。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4c6f/3765167/396d1d63e9f1/pone.0072262.g001.jpg

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