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关于衍射数据集的有效分辨率和光学分辨率。

On effective and optical resolutions of diffraction data sets.

作者信息

Urzhumtseva Ludmila, Klaholz Bruno, Urzhumtsev Alexandre

机构信息

Architecture et Réactivité de l'ARN, UPR 9002 CNRS, IBMC (Institute of Molecular and Cellular Biology), 15 Rue René Descartes, 67084 Strasbourg, France; Université Louis Pasteur de Strasbourg, 67000 Strasbourg, France.

出版信息

Acta Crystallogr D Biol Crystallogr. 2013 Oct;69(Pt 10):1921-34. doi: 10.1107/S0907444913016673. Epub 2013 Sep 20.

Abstract

In macromolecular X-ray crystallography, diffraction data sets are traditionally characterized by the highest resolution dhigh of the reflections that they contain. This measure is sensitive to individual reflections and does not refer to the eventual data incompleteness and anisotropy; it therefore does not describe the data well. A physically relevant and robust measure that provides a universal way to define the actual' effective resolution deff of a data set is introduced. This measure is based on the accurate calculation of the minimum distance between two immobile point scatterers resolved as separate peaks in the Fourier map calculated with a given set of reflections. This measure is applicable to any data set, whether complete or incomplete. It also allows characterizion of the anisotropy of diffraction data sets in which deff strongly depends on the direction. Describing mathematical objects, the effective resolution deff characterizes the geometry' of the set of measured reflections and is irrelevant to the diffraction intensities. At the same time, the diffraction intensities reflect the composition of the structure from physical entities: the atoms. The minimum distance for the atoms typical of a given structure is a measure that is different from and complementary to deff; it is also a characteristic that is complementary to conventional measures of the data-set quality. Following the previously introduced terms, this value is called the optical resolution, dopt. The optical resolution as defined here describes the separation of the atomic images in the ideal' crystallographic Fourier map that would be calculated if the exact phases were known. The effective and optical resolution, as formally introduced in this work, are of general interest, giving a common ruler' for all kinds of crystallographic diffraction data sets.

摘要

在大分子X射线晶体学中,传统上衍射数据集的特征是其所含反射的最高分辨率dhigh。该度量对单个反射敏感,且未涉及最终的数据不完整性和各向异性;因此,它不能很好地描述数据。本文引入了一种物理相关且稳健的度量,它提供了一种通用方法来定义数据集的“实际”有效分辨率deff。该度量基于精确计算两个固定点散射体之间的最小距离,这两个散射体在使用给定反射集计算的傅里叶图中解析为单独的峰。此度量适用于任何数据集,无论其是否完整。它还允许对衍射数据集的各向异性进行表征,其中deff强烈依赖于方向。描述数学对象时,有效分辨率deff表征了测量反射集的“几何形状”,与衍射强度无关。同时,衍射强度反映了由物理实体(原子)构成的结构组成。给定结构中典型原子的最小距离是一种与deff不同且互补的度量;它也是与数据集质量的传统度量互补的特征。按照先前引入的术语,该值称为光学分辨率dopt。此处定义的光学分辨率描述了在“理想”晶体学傅里叶图中原子图像的分离情况,前提是已知精确相位。本文正式引入的有效分辨率和光学分辨率具有普遍意义,为各类晶体学衍射数据集提供了一个通用的“标尺”。

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