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从代尔夫特菌属HT23菌株中分离得到的D-苏型-3-羟基天冬氨酸脱水酶的结晶及初步X射线衍射研究。

Crystallization and preliminary X-ray diffraction studies of D-threo-3-hydroxyaspartate dehydratase isolated from Delftia sp. HT23.

作者信息

Matsumoto Yu, Yasutake Yoshiaki, Takeda Yuki, Tamura Tomohiro, Yokota Atsushi, Wada Masaru

机构信息

Laboratory of Microbial Physiology, Research Faculty of Agriculture, Hokkaido University, Kita-9, Nishi-9, Kita-ku, Sapporo 060-8589, Japan.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Oct;69(Pt 10):1131-4. doi: 10.1107/S1744309113023956. Epub 2013 Sep 28.

Abstract

D-threo-3-Hydroxyaspartate dehydratase (D-THA DH) isolated from the soil bacterium Delftia sp. HT23 is a novel enzyme consisting of 380 amino-acid residues which catalyzes the conversion of D-threo-3-hydroxyaspartate to oxaloacetate and ammonia. D-THA DH also catalyzes the dehydration of L-threo-3-hydroxyaspartate, L-erythro-3-hydroxyaspartate and D-serine. The amino-acid sequence of D-THA DH shows significant similarity to that of two eukaryotic D-serine dehydratases derived from Saccharomyces cerevisiae and chicken kidney. D-THA DH is classified into the fold-type III group of pyridoxal enzymes and is the first example of a fold-type III dehydratase derived from a prokaryote. Overexpression of recombinant D-THA DH was carried out using a Rhodococcus erythropolis expression system and the obtained protein was subsequently purified and crystallized. The crystals of D-THA DH belonged to space group I4₁22, with unit-cell parameters a=b=157.3, c=157.9 Å. Single-wavelength anomalous diffraction data were collected to a resolution of 2.0 Å using synchrotron radiation at the wavelength of the Br K absorption edge.

摘要

从土壤细菌代尔夫特菌属菌株HT23中分离出的D-苏式-3-羟基天冬氨酸脱水酶(D-THA DH)是一种由380个氨基酸残基组成的新型酶,它催化D-苏式-3-羟基天冬氨酸转化为草酰乙酸和氨。D-THA DH还催化L-苏式-3-羟基天冬氨酸、L-赤式-3-羟基天冬氨酸和D-丝氨酸的脱水反应。D-THA DH的氨基酸序列与源自酿酒酵母和鸡肾的两种真核D-丝氨酸脱水酶的氨基酸序列具有显著相似性。D-THA DH被归类为吡哆醛酶的折叠型III组,是源自原核生物的折叠型III脱水酶的首个实例。使用红平红球菌表达系统进行重组D-THA DH的过表达,随后对获得的蛋白质进行纯化和结晶。D-THA DH的晶体属于空间群I4₁22,晶胞参数a = b = 157.3,c = 157.9 Å。利用溴的K吸收边波长的同步辐射收集了分辨率为2.0 Å的单波长反常衍射数据。

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