• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

微观生物过程中的信息解码

Information decoding in microscopic biological processes.

作者信息

Kobayashi Tetsuya J

出版信息

Annu Int Conf IEEE Eng Med Biol Soc. 2013;2013:2704-7. doi: 10.1109/EMBC.2013.6610098.

DOI:10.1109/EMBC.2013.6610098
PMID:24110285
Abstract

The cellular and intracellular dynamics are intrinsically stochastic and dynamic. However, whole biological system such as a cell or our body can function very robustly and stably even though they are composed of these stochastic reactions. To account for this riddling relation between macroscopic robustness and microscopic stochasticity, I propose a mechanism that information relevant for stable and reliable operation of a biological system is embedded in apparently stochastic and noisy behavior of their components. To show validity of this possibility, I demonstrates that information can actually be decoded from apparently noisy signal when it is processed by an appropriate dynamics derived by Bayes' rule. Next, I investigate biological relevance of this possibility by showing that several intracellular networks can implement this decoding dynamics. Finally, by focusing its dynamical properties, I show the mechanism how the derived dynamics can separate information and noise.

摘要

细胞和细胞内的动力学本质上是随机且动态的。然而,整个生物系统,如一个细胞或我们的身体,尽管由这些随机反应组成,却能非常稳健且稳定地发挥功能。为了解释宏观稳健性与微观随机性之间的这种令人费解的关系,我提出一种机制,即与生物系统稳定可靠运行相关的信息被嵌入其组成部分明显随机且有噪声的行为中。为了证明这种可能性的有效性,我证明当由贝叶斯法则推导的适当动力学对其进行处理时,信息实际上可以从明显有噪声的信号中解码出来。接下来,我通过展示几个细胞内网络可以实现这种解码动力学来研究这种可能性的生物学相关性。最后,通过关注其动力学特性,我展示了所推导的动力学如何分离信息和噪声的机制。

相似文献

1
Information decoding in microscopic biological processes.微观生物过程中的信息解码
Annu Int Conf IEEE Eng Med Biol Soc. 2013;2013:2704-7. doi: 10.1109/EMBC.2013.6610098.
2
Dynamics of intracellular information decoding.细胞内信息解码的动力学。
Phys Biol. 2011 Oct;8(5):055007. doi: 10.1088/1478-3975/8/5/055007. Epub 2011 Aug 10.
3
Stochastic sensitivity analysis and kernel inference via distributional data.基于分布数据的随机敏感性分析与核推断
Biophys J. 2014 Sep 2;107(5):1247-1255. doi: 10.1016/j.bpj.2014.07.025.
4
On Information Extraction and Decoding Mechanisms Improved by Noisy Amplification in Signaling Pathways.基于信号通路中噪声放大改进的信息提取和解码机制。
Sci Rep. 2019 Oct 7;9(1):14365. doi: 10.1038/s41598-019-50631-0.
5
Connection between noise-induced symmetry breaking and an information-decoding function for intracellular networks.噪声诱导的对称破缺与细胞内网络的信息解码功能之间的联系。
Phys Rev Lett. 2011 Jun 3;106(22):228101. doi: 10.1103/PhysRevLett.106.228101. Epub 2011 Jun 2.
6
Stochastic focusing coupled with negative feedback enables robust regulation in biochemical reaction networks.随机聚焦与负反馈相结合可实现生化反应网络中的稳健调节。
J R Soc Interface. 2015 Dec 6;12(113):20150831. doi: 10.1098/rsif.2015.0831.
7
Bayesian learning and predictability in a stochastic nonlinear dynamical model.贝叶斯学习与随机非线性动力学模型的可预测性。
Ecol Appl. 2013 Jun;23(4):679-98. doi: 10.1890/12-0312.1.
8
Ensemble methods for stochastic networks with special reference to the biological clock of Neurospora crassa.集合方法在随机网络中的应用,特别针对粗糙脉孢菌的生物钟。
PLoS One. 2018 May 16;13(5):e0196435. doi: 10.1371/journal.pone.0196435. eCollection 2018.
9
Topology of biological networks and reliability of information processing.生物网络的拓扑结构与信息处理的可靠性
Proc Natl Acad Sci U S A. 2005 Dec 20;102(51):18414-9. doi: 10.1073/pnas.0509132102. Epub 2005 Dec 8.
10
Bayesian inference for stochastic kinetic models using a diffusion approximation.使用扩散近似对随机动力学模型进行贝叶斯推断。
Biometrics. 2005 Sep;61(3):781-8. doi: 10.1111/j.1541-0420.2005.00345.x.

引用本文的文献

1
A reaction network scheme for hidden Markov model parameter learning.用于隐马尔可夫模型参数学习的反应网络方案。
J R Soc Interface. 2023 Jun;20(203):20220877. doi: 10.1098/rsif.2022.0877. Epub 2023 Jun 21.