Klemm Konstantin, Bornholdt Stefan
Bioinformatics Group, Department of Computer Science, University of Leipzig, Härtelstrasse 16, D-04107 Leipzig, Germany.
Proc Natl Acad Sci U S A. 2005 Dec 20;102(51):18414-9. doi: 10.1073/pnas.0509132102. Epub 2005 Dec 8.
Survival of living cells and organisms is largely based on highly reliable function of their regulatory networks. However, the elements of biological networks, e.g., regulatory genes in genetic networks or neurons in the nervous system, are far from being reliable dynamical elements. How can networks of unreliable elements perform reliably? We here address this question in networks of autonomous noisy elements with fluctuating timing and study the conditions for an overall system behavior being reproducible in the presence of such noise. We find a clear distinction between reliable and unreliable dynamical attractors. In the reliable case, synchrony is sustained in the network, whereas in the unreliable scenario, fluctuating timing of single elements can gradually desynchronize the system, leading to nonreproducible behavior. The likelihood of reliable dynamical attractors strongly depends on the underlying topology of a network. Comparing with the observed architectures of gene regulation networks, we find that those 3-node subgraphs that allow for reliable dynamics are also those that are more abundant in nature, suggesting that specific topologies of regulatory networks may provide a selective advantage in evolution through their resistance against noise.
活细胞和生物体的存活很大程度上基于其调控网络的高度可靠功能。然而,生物网络的元件,例如遗传网络中的调控基因或神经系统中的神经元,远非可靠的动态元件。不可靠元件组成的网络如何可靠地运行?我们在此研究具有波动时间的自主噪声元件网络中的这一问题,并探讨在存在此类噪声的情况下整个系统行为可重现的条件。我们发现可靠和不可靠的动态吸引子之间存在明显区别。在可靠的情况下,网络中维持同步,而在不可靠的情形下,单个元件的波动时间可使系统逐渐失步,导致行为不可重现。可靠动态吸引子的可能性很大程度上取决于网络的基础拓扑结构。与观察到的基因调控网络架构相比,我们发现那些允许可靠动态的三节点子图在自然界中也更为丰富,这表明调控网络的特定拓扑结构可能通过其抗噪声能力在进化中提供选择优势。