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通过 N-取代甲酰胺基水解酶的逆向反应合成 N-苄基羧酰胺的新途径。

A new synthetic route to N-benzyl carboxamides through the reverse reaction of N-substituted formamide deformylase.

机构信息

Institute of Applied Biochemistry and Graduate School of Life and Environmental Sciences, The University of Tsukuba, Tennodai, Tsukuba, Ibaraki, Japan.

出版信息

Appl Environ Microbiol. 2014 Jan;80(1):61-9. doi: 10.1128/AEM.02429-13. Epub 2013 Oct 11.

Abstract

Previously, we isolated a new enzyme, N-substituted formamide deformylase, that catalyzes the hydrolysis of N-substituted formamide to the corresponding amine and formate (H. Fukatsu, Y. Hashimoto, M. Goda, H. Higashibata, and M. Kobayashi, Proc. Natl. Acad. Sci. U. S. A. 101:13726-13731, 2004, doi:10.1073/pnas.0405082101). Here, we discovered that this enzyme catalyzed the reverse reaction, synthesizing N-benzylformamide (NBFA) from benzylamine and formate. The reverse reaction proceeded only in the presence of high substrate concentrations. The effects of pH and inhibitors on the reverse reaction were almost the same as those on the forward reaction, suggesting that the forward and reverse reactions are both catalyzed at the same catalytic site. Bisubstrate kinetic analysis using formate and benzylamine and dead-end inhibition studies using a benzylamine analogue, aniline, revealed that the reverse reaction of this enzyme proceeds via an ordered two-substrate, two-product (bi-bi) mechanism in which formate binds first to the enzyme active site, followed by benzylamine binding and the subsequent release of NBFA. To our knowledge, this is the first report of the reverse reaction of an amine-forming deformylase. Surprisingly, analysis of the substrate specificity for acids demonstrated that not only formate, but also acetate and propionate (namely, acids with numbers of carbon atoms ranging from C1 to C3), were active as acid substrates for the reverse reaction. Through this reaction, N-substituted carboxamides, such as NBFA, N-benzylacetamide, and N-benzylpropionamide, were synthesized from benzylamine and the corresponding acid substrates.

摘要

此前,我们分离出一种新的酶,N-取代甲酰胺(formamide)脱甲酰酶,它能催化 N-取代甲酰胺水解为相应的胺和甲酸盐 (H. Fukatsu, Y. Hashimoto, M. Goda, H. Higashibata, and M. Kobayashi, Proc. Natl. Acad. Sci. U. S. A. 101:13726-13731, 2004, doi:10.1073/pnas.0405082101)。在这里,我们发现该酶还能催化其逆反应,即由苄胺和甲酸盐合成 N-苄基甲酰胺 (NBFA)。该逆反应仅在高底物浓度下进行。该逆反应的 pH 和抑制剂效应与正反应几乎相同,这表明正反应和逆反应均在同一催化部位进行。通过使用甲酸盐和苄胺进行双底物动力学分析以及使用苄胺类似物苯胺进行末端抑制研究,发现该酶的逆反应通过有序的双底物、双产物 (bi-bi) 机制进行,其中甲酸盐首先与酶活性位点结合,然后苄胺结合,随后释放 NBFA。据我们所知,这是第一个报道的胺形成脱甲酰酶的逆反应。令人惊讶的是,对酸的底物特异性分析表明,不仅甲酸盐,而且乙酸盐和丙酸盐(即碳原子数从 C1 到 C3 的酸)也可作为逆反应的酸底物发挥作用。通过该反应,可由苄胺和相应的酸底物合成 N-取代的酰胺,如 NBFA、N-苄基乙酰胺和 N-苄基丙酰胺。

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