• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

超越转录组:免疫基因组计划第一幕的完成。

Beyond the transcriptome: completion of act one of the Immunological Genome Project.

机构信息

Division of Experimental Medicine, Department of Medicine, University of California San Francisco, San Francisco, CA 94110, United States.

出版信息

Curr Opin Immunol. 2013 Oct;25(5):593-7. doi: 10.1016/j.coi.2013.09.013. Epub 2013 Oct 27.

DOI:10.1016/j.coi.2013.09.013
PMID:24168965
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3855358/
Abstract

The Immunological Genome Consortium has generated a public resource (www.immgen.org) that provides a compendium of gene expression profiles of ∼270 leukocyte subsets in the mouse. This effort established carefully standardized operating procedures that resulted in a transcriptional dataset of unprecedented comprehensiveness and quality. The findings have been detailed recently in a series of publications providing molecular insights into the development, heterogeneity, and/or function of these cellular lineages and distinct subpopulations. Here, we review the key findings of these studies, highlighting what has been gained and how the knowledge can be used to accelerate progress toward a comprehensive understanding of the immune system.

摘要

免疫基因组联盟(Immunological Genome Consortium)已经创建了一个公共资源(www.immgen.org),提供了约 270 种小鼠白细胞亚群的基因表达谱汇编。该工作建立了精心标准化的操作程序,产生了一个具有空前全面性和质量的转录数据集。这些发现最近在一系列出版物中得到了详细阐述,这些出版物为这些细胞谱系和不同亚群的发育、异质性和/或功能提供了分子见解。在这里,我们回顾了这些研究的主要发现,强调了所取得的成果以及如何利用这些知识来加速对免疫系统的全面理解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0b5/3855358/fede51e675e8/nihms530116f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0b5/3855358/fede51e675e8/nihms530116f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0b5/3855358/fede51e675e8/nihms530116f1.jpg

相似文献

1
Beyond the transcriptome: completion of act one of the Immunological Genome Project.超越转录组:免疫基因组计划第一幕的完成。
Curr Opin Immunol. 2013 Oct;25(5):593-7. doi: 10.1016/j.coi.2013.09.013. Epub 2013 Oct 27.
2
Immunological Genome Project and systems immunology.免疫基因组计划与系统免疫学。
Trends Immunol. 2013 Dec;34(12):602-9. doi: 10.1016/j.it.2013.03.004. Epub 2013 Apr 27.
3
Differential protein network analysis of the immune cell lineage.免疫细胞谱系的差异蛋白质网络分析。
Biomed Res Int. 2014;2014:363408. doi: 10.1155/2014/363408. Epub 2014 Sep 21.
4
Interactive Big Data Resource to Elucidate Human Immune Pathways and Diseases.用于阐明人类免疫途径和疾病的交互式大数据资源。
Immunity. 2015 Sep 15;43(3):605-14. doi: 10.1016/j.immuni.2015.08.014. Epub 2015 Sep 8.
5
Transcriptome and proteome quantification of a tumor model provides novel insights into post-transcriptional gene regulation.肿瘤模型的转录组和蛋白质组定量分析为转录后基因调控提供了新见解。
Genome Biol. 2013 Nov 30;14(11):r133. doi: 10.1186/gb-2013-14-11-r133.
6
Genome-wide analysis of the mouse lung transcriptome reveals novel molecular gene interaction networks and cell-specific expression signatures.对小鼠肺转录组的全基因组分析揭示了新的分子基因相互作用网络和细胞特异性表达特征。
Respir Res. 2011 May 2;12(1):61. doi: 10.1186/1465-9921-12-61.
7
Novel insights into the relationships between dendritic cell subsets in human and mouse revealed by genome-wide expression profiling.通过全基因组表达谱分析揭示人类和小鼠树突状细胞亚群之间关系的新见解。
Genome Biol. 2008 Jan 24;9(1):R17. doi: 10.1186/gb-2008-9-1-r17.
8
Single-Cell Transcriptome Profiling of Immune Cell Repertoire of the Atlantic Cod Which Naturally Lacks the Major Histocompatibility Class II System.大西洋鳕鱼免疫细胞库的单细胞转录组分析,该鳕鱼天然缺乏主要组织相容性复合体 II 系统。
Front Immunol. 2020 Oct 9;11:559555. doi: 10.3389/fimmu.2020.559555. eCollection 2020.
9
Integration of microRNA signatures of distinct mammary epithelial cell types with their gene expression and epigenetic portraits.不同乳腺上皮细胞类型的微小RNA特征与其基因表达和表观遗传图谱的整合。
Breast Cancer Res. 2015 Jun 18;17(1):85. doi: 10.1186/s13058-015-0585-0.
10
RegNetwork: an integrated database of transcriptional and post-transcriptional regulatory networks in human and mouse.RegNetwork:人类和小鼠转录及转录后调控网络的综合数据库。
Database (Oxford). 2015 Sep 30;2015. doi: 10.1093/database/bav095. Print 2015.

引用本文的文献

1
Breast cancer cells survive chemotherapy by activating targetable immune-modulatory programs characterized by PD-L1 or CD80.乳腺癌细胞通过激活靶向免疫调节程序来存活化疗,这些程序的特征是 PD-L1 或 CD80。
Nat Cancer. 2022 Dec;3(12):1513-1533. doi: 10.1038/s43018-022-00466-y. Epub 2022 Dec 8.
2
The kidney protects against sepsis by producing systemic uromodulin.肾脏通过产生全身性尿调蛋白来预防败血症。
Am J Physiol Renal Physiol. 2022 Aug 1;323(2):F212-F226. doi: 10.1152/ajprenal.00146.2022. Epub 2022 Jun 27.
3
RNA-Seq of Single Fish Cells - Seeking Out the Leukocytes Mediating Immunity in Teleost Fishes.单细胞鱼类 RNA-Seq 分析——寻找参与硬骨鱼类免疫的白细胞。
Front Immunol. 2022 Jan 24;13:798712. doi: 10.3389/fimmu.2022.798712. eCollection 2022.
4
Steroid receptor coactivator 3 (SRC-3/AIB1) is enriched and functional in mouse and human Tregs.类固醇受体共激活因子 3(SRC-3/AIB1)在小鼠和人类 Tregs 中丰富且具有功能。
Sci Rep. 2021 Feb 9;11(1):3441. doi: 10.1038/s41598-021-82945-3.
5
A DNA Hypomethylating Drug Alters the Tumor Microenvironment and Improves the Effectiveness of Immune Checkpoint Inhibitors in a Mouse Model of Pancreatic Cancer.一种 DNA 去甲基化药物改变肿瘤微环境,提高免疫检查点抑制剂在胰腺癌小鼠模型中的疗效。
Cancer Res. 2020 Nov 1;80(21):4754-4767. doi: 10.1158/0008-5472.CAN-20-0285. Epub 2020 Aug 14.
6
A transcriptome-based approach to identify functional modules within and across primary human immune cells.基于转录组的方法鉴定原发性人免疫细胞内和细胞间的功能模块。
PLoS One. 2020 May 29;15(5):e0233543. doi: 10.1371/journal.pone.0233543. eCollection 2020.
7
Transcriptional regulation of homeostatic and disease-associated-microglial genes by IRF1, LXRβ, and CEBPα.IRF1、LXRβ 和 CEBPα 对稳态和疾病相关小胶质细胞基因的转录调控。
Glia. 2019 Oct;67(10):1958-1975. doi: 10.1002/glia.23678. Epub 2019 Jul 13.
8
Genomic and molecular control of cell type and cell type conversions.细胞类型及细胞类型转换的基因组和分子调控
Cell Regen. 2017 Nov 22;6:1-7. doi: 10.1016/j.cr.2017.09.001. eCollection 2017 Dec.
9
The Human Cell Atlas.人类细胞图谱
Elife. 2017 Dec 5;6:e27041. doi: 10.7554/eLife.27041.
10
SaVanT: a web-based tool for the sample-level visualization of molecular signatures in gene expression profiles.SaVanT:一个基于网络的工具,用于在基因表达谱中对分子特征进行样本级可视化。
BMC Genomics. 2017 Oct 25;18(1):824. doi: 10.1186/s12864-017-4167-7.

本文引用的文献

1
Immunological Genome Project and systems immunology.免疫基因组计划与系统免疫学。
Trends Immunol. 2013 Dec;34(12):602-9. doi: 10.1016/j.it.2013.03.004. Epub 2013 Apr 27.
2
Transcriptional insights into the CD8(+) T cell response to infection and memory T cell formation.转录组学揭示 CD8(+) T 细胞对感染和记忆 T 细胞形成的反应。
Nat Immunol. 2013 Apr;14(4):404-12. doi: 10.1038/ni.2536. Epub 2013 Feb 10.
3
Shared and distinct transcriptional programs underlie the hybrid nature of iNKT cells.iNKT 细胞的混合性质由共享和独特的转录程序决定。
Nat Immunol. 2013 Jan;14(1):90-9. doi: 10.1038/ni.2490. Epub 2012 Dec 2.
4
Network analysis reveals centrally connected genes and pathways involved in CD8+ T cell exhaustion versus memory.网络分析揭示了 CD8+ T 细胞耗竭与记忆相关的中枢连接基因和途径。
Immunity. 2012 Dec 14;37(6):1130-44. doi: 10.1016/j.immuni.2012.08.021. Epub 2012 Nov 15.
5
Gene-expression profiles and transcriptional regulatory pathways that underlie the identity and diversity of mouse tissue macrophages.小鼠组织巨噬细胞的特征和多样性所依赖的基因表达谱和转录调控途径。
Nat Immunol. 2012 Nov;13(11):1118-28. doi: 10.1038/ni.2419. Epub 2012 Sep 30.
6
Maintaining system homeostasis: the third law of Newtonian immunology.维持系统内稳态:牛顿免疫学第三定律。
Nat Immunol. 2012 Oct;13(10):902-6. doi: 10.1038/ni.2404.
7
Consortium biology in immunology: the perspective from the Immunological Genome Project.免疫基因组计划视角下的免疫学生物联盟
Nat Rev Immunol. 2012 Oct;12(10):734-40. doi: 10.1038/nri3300. Epub 2012 Sep 7.
8
Molecular definition of the identity and activation of natural killer cells.自然杀伤细胞的身份和激活的分子定义。
Nat Immunol. 2012 Oct;13(10):1000-9. doi: 10.1038/ni.2395. Epub 2012 Aug 19.
9
Deciphering the transcriptional network of the dendritic cell lineage.解析树突状细胞谱系的转录网络。
Nat Immunol. 2012 Sep;13(9):888-99. doi: 10.1038/ni.2370. Epub 2012 Jul 15.
10
Intrathymic programming of effector fates in three molecularly distinct γδ T cell subtypes.胸腺内效应器命运的程序化在三种分子上明显不同的 γδ T 细胞亚类中。
Nat Immunol. 2012 Apr 1;13(5):511-8. doi: 10.1038/ni.2247.