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双链特异性核糖核酸酶分离的改进方法及其在各种5S核糖体核糖核酸和转运核糖核酸结构分析中的应用。

Improved procedure for the isolation of a double-strand-specific ribonuclease and its application to structural analysis of various 5S rRNAs and tRNAs.

作者信息

Digweed M, Pieler T, Kluwe D, Schuster L, Walker R, Erdmann V A

出版信息

Eur J Biochem. 1986 Jan 2;154(1):31-9. doi: 10.1111/j.1432-1033.1986.tb09355.x.

DOI:10.1111/j.1432-1033.1986.tb09355.x
PMID:2417836
Abstract

An improved method for the isolation of a double-strand-specific RNase from snake venom is presented. This RNase, called CSV, was used to cleave yeast tRNAPhe and tRNA2Glu and tRNAfMet from Escherichia coli. In addition these RNAs and E. coli tRNAPhe were examined with the single-strand-specific nuclease S1. The results are discussed in terms of the specificity of CSV RNase and the structure of tRNAs. S1 nuclease digestions at increasing temperatures allowed the melting of tertiary and secondary structure to be monitored. 5S rRNA from E. coli, Thermoplasma acidophilum and the chloroplasts of Spinacia oleracea were digested with CSV and S1. The information these results give on the secondary-structural differences between different classes of 5S rRNA are discussed. Supporting evidence is found for tertiary interactions between hairpin loop c and internal loop d of eubacterial 5S rRNA.

摘要

本文介绍了一种从蛇毒中分离双链特异性核糖核酸酶的改进方法。这种核糖核酸酶称为CSV,用于切割酵母苯丙氨酸转运核糖核酸(tRNAPhe)、大肠杆菌的谷氨酰胺转运核糖核酸(tRNA2Glu)和甲硫氨酸起始转运核糖核酸(tRNAfMet)。此外,还使用单链特异性核酸酶S1对这些核糖核酸以及大肠杆菌的苯丙氨酸转运核糖核酸进行了检测。根据CSV核糖核酸酶的特异性和转运核糖核酸的结构对结果进行了讨论。在不断升高的温度下用S1核酸酶进行消化,可以监测三级和二级结构的解链情况。用CSV和S1对大肠杆菌、嗜热栖热菌和菠菜叶绿体的5S核糖体核糖核酸进行了消化。讨论了这些结果所提供的关于不同类别的5S核糖体核糖核酸二级结构差异的信息。发现了支持真细菌5S核糖体核糖核酸发夹环c和内环d之间三级相互作用的证据。

相似文献

1
Improved procedure for the isolation of a double-strand-specific ribonuclease and its application to structural analysis of various 5S rRNAs and tRNAs.双链特异性核糖核酸酶分离的改进方法及其在各种5S核糖体核糖核酸和转运核糖核酸结构分析中的应用。
Eur J Biochem. 1986 Jan 2;154(1):31-9. doi: 10.1111/j.1432-1033.1986.tb09355.x.
2
Structural analyses of E. coli 5S RNA fragments, their associates and complexes with proteins L18 and L25.大肠杆菌5S RNA片段、其与蛋白质L18和L25的缔合物及复合物的结构分析。
Nucleic Acids Res. 1982 Feb 11;10(3):947-65. doi: 10.1093/nar/10.3.947.
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Secondary structure of Bombyx mori and Dictyostelium discoideum 5S rRNA from S1 nuclease and cobra venom ribonuclease susceptibility, and computer assisted analysis.家蚕和盘基网柄菌5S rRNA的二级结构:基于S1核酸酶和眼镜蛇毒核糖核酸酶敏感性及计算机辅助分析
Nucleic Acids Res. 1982 Jan 22;10(2):653-64. doi: 10.1093/nar/10.2.653.
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Mapping tRNA structure in solution using double-strand-specific ribonuclease V1 from cobra venom.利用眼镜蛇毒中的双链特异性核糖核酸酶V1对溶液中的转运RNA结构进行映射分析。
Nucleic Acids Res. 1981 Oct 10;9(19):5125-40. doi: 10.1093/nar/9.19.5125.
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Structural analysis of 5S rRNA, 5S rRNA-protein complexes and ribosomes employing RNase H and d(GTTCGG).运用核糖核酸酶H和d(GTTCGG)对5S核糖体核糖核酸、5S核糖体核糖核酸-蛋白质复合物及核糖体进行结构分析。
Eur J Biochem. 1987 Mar 2;163(2):239-46. doi: 10.1111/j.1432-1033.1987.tb10793.x.
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Location of single-stranded and double-stranded regions in rat liver ribosomal 5S RNA and 5.8S RNA.大鼠肝脏核糖体5S RNA和5.8S RNA中单链和双链区域的定位
Nucleic Acids Res. 1981 Oct 24;9(20):5331-43. doi: 10.1093/nar/9.20.5331.
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Comparison of transfer ribonucleic acid structures using cobra venom and S1 endonucleases.使用眼镜蛇毒和S1核酸内切酶对转移核糖核酸结构的比较
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Nuclease S1 analysis of eubacterial 5S rRNA secondary structure.真细菌5S rRNA二级结构的核酸酶S1分析
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Three-dimensional structural model of eubacterial 5S RNA that has functional implications.具有功能意义的真细菌5S RNA三维结构模型。
Proc Natl Acad Sci U S A. 1982 Aug;79(15):4599-603. doi: 10.1073/pnas.79.15.4599.
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Escherichia coli 5S RNA A and B conformers. Characterisation by enzymatic and chemical methods.大肠杆菌5S RNA的A和B构象体。通过酶法和化学方法进行表征。
Eur J Biochem. 1984 Oct 1;144(1):25-34. doi: 10.1111/j.1432-1033.1984.tb08426.x.

引用本文的文献

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Nucleotide sequence of the 5S rRNA from Listonella (Vibrio) aestuarianus ATCC 35048.河口弧菌(弧菌属)ATCC 35048 5S rRNA的核苷酸序列。
Nucleic Acids Res. 1987 Feb 25;15(4):1879. doi: 10.1093/nar/15.4.1879.
2
Analysis of the RNA structural elements involved in the binding of the transcription factor III A from Xenopus laevis.非洲爪蟾转录因子 III A 结合相关 RNA 结构元件的分析。
Nucleic Acids Res. 1986 Aug 11;14(15):6313-26. doi: 10.1093/nar/14.15.6313.
3
Nucleotide sequence of the 5S rRNA from the archaebacterium Halobacterium maris mortui.
嗜盐古菌死海嗜盐杆菌5S rRNA的核苷酸序列。
Nucleic Acids Res. 1986 Jun 11;14(11):4693. doi: 10.1093/nar/14.11.4693.
4
A comparison of the solution structures and conformational properties of the somatic and oocyte 5S rRNAs of Xenopus laevis.非洲爪蟾体细胞和卵母细胞5S rRNA的溶液结构及构象性质比较
Nucleic Acids Res. 1988 Mar 25;16(5):2295-312. doi: 10.1093/nar/16.5.2295.
5
Oocyte and somatic 5S ribosomal RNA and 5S RNA encoding genes in Xenopus tropicalis.热带爪蟾中的卵母细胞和体细胞5S核糖体RNA及5S RNA编码基因。
Nucleic Acids Res. 1988 Sep 26;16(18):8803-15. doi: 10.1093/nar/16.18.8803.
6
The sequence of the 6S RNA gene of Pseudomonas aeruginosa.铜绿假单胞菌6S RNA基因序列。
Nucleic Acids Res. 1987 Jun 11;15(11):4583-91. doi: 10.1093/nar/15.11.4583.