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具有功能意义的真细菌5S RNA三维结构模型。

Three-dimensional structural model of eubacterial 5S RNA that has functional implications.

作者信息

Pieler T, Erdmann V A

出版信息

Proc Natl Acad Sci U S A. 1982 Aug;79(15):4599-603. doi: 10.1073/pnas.79.15.4599.

DOI:10.1073/pnas.79.15.4599
PMID:6181508
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC346722/
Abstract

Escherichia coli 5S RNA and its specific protein complexes were hydrolyzed with the single-strand-specific nuclease S1. Based on the results, a tertiary structural model for E. coli 5S RNA is proposed in which ribosomal proteins E-L5, E-L18, and E-L25 influence the conformation of the RNA. This may be of significance for ribosomal function. Comparison of the proposed E. coli 5S RNA structure with those of 18 other prokaryotic 5S RNAs led to a generalized eubacterial 5S RNA tertiary structure in which the majority of the conserved nucleotides are in non-base-paired regions and several conserved "looped-out" adenines (in E. coli, adenines -52, -53, -57, -58, and -66) are implied to be important for protein recognition or interaction or both.

摘要

用单链特异性核酸酶S1水解大肠杆菌5S RNA及其特异性蛋白质复合物。基于这些结果,提出了大肠杆菌5S RNA的三级结构模型,其中核糖体蛋白E-L5、E-L18和E-L25影响RNA的构象。这可能对核糖体功能具有重要意义。将所提出的大肠杆菌5S RNA结构与其他18种原核生物5S RNA的结构进行比较,得出了一个广义的真细菌5S RNA三级结构,其中大多数保守核苷酸位于非碱基配对区域,并且几个保守的“环出”腺嘌呤(在大肠杆菌中,腺嘌呤-52、-53、-57、-58和-66)被认为对蛋白质识别或相互作用或两者都很重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7e59/346722/9556d1e28f7a/pnas00454-0078-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7e59/346722/3338f69d7bb2/pnas00454-0078-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7e59/346722/9556d1e28f7a/pnas00454-0078-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7e59/346722/3338f69d7bb2/pnas00454-0078-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7e59/346722/9556d1e28f7a/pnas00454-0078-b.jpg

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Three-dimensional structural model of eubacterial 5S RNA that has functional implications.具有功能意义的真细菌5S RNA三维结构模型。
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本文引用的文献

1
Laser Raman studies of rat liver ribosomal 5 S RNA.
FEBS Lett. 1981 Jan 12;123(1):19-21. doi: 10.1016/0014-5793(81)80009-9.
2
Determination of base pairing in yeast 5S and 5.8S RNA infrared spectroscopy.酵母5S和5.8S RNA碱基配对的红外光谱测定
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Collection of published 5S and 5.8S RNA sequences and their precursors.已发表的5S和5.8S RNA序列及其前体的收集。
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Nucleic Acids Res. 1983 Feb 11;11(3):893-900. doi: 10.1093/nar/11.3.893.
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Precise localisation of three intra-RNA cross-links in 23S RNA and one in 5S RNA, induced by treatment of Escherichia coli 50S ribosomal subunits with bis-(2-chloroethyl)-methylamine.用双(2-氯乙基)甲胺处理大肠杆菌50S核糖体亚基后,在23S RNA中诱导产生的三个RNA内交联以及在5S RNA中诱导产生的一个交联的精确定位。
Nucleic Acids Res. 1982 Nov 25;10(22):7211-29. doi: 10.1093/nar/10.22.7211.
5
An energy model that predicts the correct folding of both the tRNA and the 5S RNA molecules.一种能预测转运核糖核酸(tRNA)和5S核糖核酸(5S RNA)分子正确折叠的能量模型。
Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):31-44. doi: 10.1093/nar/12.1part1.31.
6
Phylogeny of the 5S ribosomal RNA from Synechococcus lividus II: the cyanobacterial/chloroplast 5S RNAs form a common structural class.蓝纤维藻5S核糖体RNA的系统发育II:蓝细菌/叶绿体5S RNA形成一个共同的结构类别。
J Mol Evol. 1984;21(4):334-7. doi: 10.1007/BF02115651.
7
Sequences of the 5S rRNAs of Azotobacter vinelandii, Pseudomonas aeruginosa and Pseudomonas fluorescens with some notes on 5S RNA secondary structure.棕色固氮菌、铜绿假单胞菌和荧光假单胞菌5S rRNA的序列及关于5S RNA二级结构的一些注释
Nucleic Acids Res. 1983 Mar 11;11(5):1245-52. doi: 10.1093/nar/11.5.1245.
8
Structural requirements for the interaction of 5S rRNA with the eukaryotic transcription factor IIIA.5S核糖体RNA与真核转录因子IIIA相互作用的结构要求
Nucleic Acids Res. 1984 Nov 26;12(22):8393-406. doi: 10.1093/nar/12.22.8393.
9
Nuclease protection analysis of ribonucleoprotein complexes: use of the cytotoxic ribonuclease alpha-sarcin to determine the binding sites for Escherichia coli ribosomal proteins L5, L18, and L25 on 5S rRNA.核糖核蛋白复合体的核酸酶保护分析:利用细胞毒性核糖核酸酶α-肌动蛋白确定大肠杆菌核糖体蛋白L5、L18和L25在5S rRNA上的结合位点。
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J Mol Biol. 1981 Feb 25;146(2):223-39. doi: 10.1016/0022-2836(81)90433-2.
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A unique secondary folding pattern for 5S RNA corresponds to the lowest energy homologous secondary structure in 17 different prokaryotes.5S RNA独特的二级折叠模式与17种不同原核生物中能量最低的同源二级结构相对应。
Nucleic Acids Res. 1981 Apr 24;9(8):1885-904. doi: 10.1093/nar/9.8.1885.
10
Reconstitution of biologically active 50S ribosomal subunits with artificial 5S RNA molecules carrying disturbances in the base pairing within the molecular stalk.用在分子茎内碱基配对存在干扰的人工5S RNA分子重建具有生物活性的50S核糖体亚基。
Nucleic Acids Res. 1981 Mar 11;9(5):1263-9. doi: 10.1093/nar/9.5.1263.