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(+)-6-氨基青霉烷酸的晶体结构与堆积能计算

Crystal structure and packing energy calculations of (+)-6-aminopenicillanic acid.

作者信息

Saouane Sofiane, Buth Gernot, Fabbiani Francesca P A

机构信息

Abteilung Kristallographie, GZG, Georg-August-Universität Göttingen, Goldschmidtstrasse 1, D-37077 Göttingen, Germany.

出版信息

Acta Crystallogr C. 2013 Nov;69(Pt 11):1238-42. doi: 10.1107/S0108270113025924. Epub 2013 Oct 24.

Abstract

The X-ray single-crystal structure of (2S,5R,6R)-6-amino-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid, commonly known as (+)-6-aminopenicillanic acid (C8H12N2O3S) and a precursor of a variety of semi-synthetic penicillins, has been determined from synchrotron data at 150 K. The structure represents an ordered zwitterion and the crystals are nonmerohedrally twinned. The crystal structure is composed of a three-dimensional network built by three charge-assisted hydrogen bonds between the ammonium and carboxylate groups. The complementary analysis of the crystal packing by the PIXEL method brings to light the nature and ranking of the energetically most stabilizing intermolecular interaction energies. In accordance with the zwitterionic nature of the structure, PIXEL lattice energy calculations confirm the predominance of the Coulombic term (-379.1 kJ mol(-1)) ahead of the polarization (-141.4 kJ mol(-1)), dispersion (-133.7 kJ mol(-1)) and repulsion (266.3 kJ mol(-1)) contributions.

摘要

(2S,5R,6R)-6-氨基-3,3-二甲基-7-氧代-4-硫杂-1-氮杂双环[3.2.0]庚烷-2-羧酸,通常称为(+)-6-氨基青霉烷酸(C8H12N2O3S),是多种半合成青霉素的前体,其X射线单晶结构已通过150 K的同步辐射数据确定。该结构代表一种有序的两性离子,晶体为非merohedrally孪晶。晶体结构由铵基和羧基之间的三个电荷辅助氢键构成的三维网络组成。通过PIXEL方法对晶体堆积进行的补充分析揭示了能量上最稳定的分子间相互作用能的性质和排序。根据该结构的两性离子性质,PIXEL晶格能计算证实库仑项(-379.1 kJ mol(-1))在极化(-141.4 kJ mol(-1))、色散(-133.7 kJ mol(-1))和排斥(266.3 kJ mol(-1))贡献之前占主导地位。

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