鱼类病原体鲑鱼立克次氏体的基因组序列草图
Draft Genome Sequence of the Fish Pathogen Piscirickettsia salmonis.
作者信息
Eppinger Mark, McNair Katelyn, Zogaj Xhavit, Dinsdale Elizabeth A, Edwards Robert A, Klose Karl E
机构信息
South Texas Center for Emerging Infectious Diseases, University of Texas at San Antonio, San Antonio, Texas, USA.
出版信息
Genome Announc. 2013 Nov 7;1(6):e00926-13. doi: 10.1128/genomeA.00926-13.
Abstract
Piscirickettsia salmonis is a Gram-negative intracellular fish pathogen that has a significant impact on the salmon industry. Here, we report the genome sequence of P. salmonis strain LF-89. This is the first draft genome sequence of P. salmonis, and it reveals interesting attributes, including flagellar genes, despite this bacterium being considered nonmotile.
摘要
鲑鱼立克次氏体是一种革兰氏阴性细胞内鱼类病原体，对鲑鱼产业有重大影响。在此，我们报告鲑鱼立克次氏体菌株LF-89的基因组序列。这是鲑鱼立克次氏体的首个基因组草图序列，它揭示了一些有趣的特性，包括鞭毛基因，尽管这种细菌被认为是不运动的。
相似文献
1
Draft Genome Sequence of the Fish Pathogen Piscirickettsia salmonis.鱼类病原体鲑鱼立克次氏体的基因组序列草图
Genome Announc. 2013 Nov 7;1(6):e00926-13. doi: 10.1128/genomeA.00926-13.
2
Complete genome sequence of Piscirickettsia salmonis LF-89 (ATCC VR-1361) a major pathogen of farmed salmonid fish.养殖鲑科鱼类的主要病原体——鲑立克次氏体LF-89（ATCC VR-1361）的全基因组序列
J Biotechnol. 2015 Oct 20;212:30-1. doi: 10.1016/j.jbiotec.2015.07.017. Epub 2015 Jul 26.
3
Whole-genome comparative analysis of the pathogen Piscirickettsia salmonis.鲑鱼立克次氏体病原体的全基因组比较分析
Vet Microbiol. 2016 Nov 30;196:36-43. doi: 10.1016/j.vetmic.2016.10.015. Epub 2016 Oct 12.
4
Transcriptomic Changes of During Intracellular Growth in a Salmon Macrophage-Like Cell Line.在三文鱼巨噬细胞样细胞系中的细胞内生长过程中的转录组变化。
Front Cell Infect Microbiol. 2020 Jan 9;9:426. doi: 10.3389/fcimb.2019.00426. eCollection 2019.
5
A functional ferric uptake regulator (Fur) protein in the fish pathogen Piscirickettsia salmonis.鱼病原菌三文鱼鱼虱中的一种功能性铁摄取调控因子（Fur）蛋白。
Int Microbiol. 2016 Mar;19(1):49-55. doi: 10.2436/20.1501.01.263.
6
Transcriptional response of Atlantic salmon families to Piscirickettsia salmonis infection highlights the relevance of the iron-deprivation defence system.大西洋鲑鱼家族对鲑鱼立克次氏体感染的转录反应突出了缺铁防御系统的相关性。
BMC Genomics. 2015 Jul 4;16(1):495. doi: 10.1186/s12864-015-1716-9.
7
Comparative Pan-Genome Analysis of Reveals Genomic Divergences within Genogroups.比较泛基因组分析揭示了 within Genogroups 内的基因组差异。
Front Cell Infect Microbiol. 2017 Oct 31;7:459. doi: 10.3389/fcimb.2017.00459. eCollection 2017.
8
Analysis of Metabolism Using Genome-Scale Reconstruction, Modeling, and Testing.利用基因组规模重建、建模和测试进行代谢分析。
Front Microbiol. 2017 Dec 11;8:2462. doi: 10.3389/fmicb.2017.02462. eCollection 2017.
9
ISPsa2, the first mobile genetic element to be described and characterized in the bacterial facultative intracellular pathogen Piscirickettsia salmonis.ISPsa2 是在鱼类兼性胞内病原体鲑鱼鱼立克次体中被描述和鉴定的第一个移动遗传元件。
FEMS Microbiol Lett. 2011 Jan;314(1):18-24. doi: 10.1111/j.1574-6968.2010.02132.x. Epub 2010 Nov 12.
10
Assessing the impacts of skin mucus from Salmo salar and Oncorhynchus mykiss on the growth and in vitro infectivity of the fish pathogen Piscirickettsia salmonis.评估三文鱼和虹鳟皮肤黏液对鱼类病原体鲑鱼传染性造血器官坏死病毒的生长和体外感染力的影响。
J Fish Dis. 2021 Feb;44(2):181-190. doi: 10.1111/jfd.13275. Epub 2020 Oct 2.
引用本文的文献
1
Why vaccines fail against in farmed salmon and trout and how to avoid it: A review.为什么疫苗在养殖三文鱼和鳟鱼中失效，以及如何避免这种情况：综述。
Front Immunol. 2022 Nov 17;13:1019404. doi: 10.3389/fimmu.2022.1019404. eCollection 2022.
2
The Promise of Whole Genome Pathogen Sequencing for the Molecular Epidemiology of Emerging Aquaculture Pathogens.全基因组病原体测序在新兴水产养殖病原体分子流行病学中的前景
Front Microbiol. 2017 Feb 3;8:121. doi: 10.3389/fmicb.2017.00121. eCollection 2017.
3
Draft Genome Sequence of a New Zealand Rickettsia-Like Organism Isolated from Farmed Chinook Salmon.从养殖的奇努克鲑鱼中分离出的一种新西兰立克次氏体样生物体的基因组序列草图
Genome Announc. 2016 Jun 30;4(3):e00503-16. doi: 10.1128/genomeA.00503-16.
4
Comparative Genome Analysis of Two Isolates of the Fish Pathogen Piscirickettsia salmonis from Different Hosts Reveals Major Differences in Virulence-Associated Secretion Systems.对来自不同宿主的鱼类病原菌鲑鱼立克次氏体的两个分离株进行比较基因组分析，揭示了与毒力相关的分泌系统的主要差异。
Genome Announc. 2014 Dec 18;2(6):e01219-14. doi: 10.1128/genomeA.01219-14.
本文引用的文献
1
Biofilm generation by Piscirickettsia salmonis under growth stress conditions: a putative in vivo survival/persistence strategy in marine environments.鲑鱼弧菌在生长胁迫条件下生成生物膜：海洋环境中一种潜在的体内生存/持久策略。
Res Microbiol. 2012 Sep-Oct;163(8):557-66. doi: 10.1016/j.resmic.2012.08.002. Epub 2012 Aug 4.
2
The IGS Standard Operating Procedure for Automated Prokaryotic Annotation.IGS 原核生物自动注释标准操作规程。
Stand Genomic Sci. 2011 Apr 29;4(2):244-51. doi: 10.4056/sigs.1223234. Epub 2011 Apr 25.
3
Using the Velvet de novo assembler for short-read sequencing technologies.将Velvet从头组装程序用于短读长测序技术。
Curr Protoc Bioinformatics. 2010 Sep;Chapter 11:Unit 11.5. doi: 10.1002/0471250953.bi1105s31.
4
Piscirickettsia salmonis induces apoptosis in macrophages and monocyte-like cells from rainbow trout.鲑鱼鱼立克次体诱导虹鳟巨噬细胞和单核样细胞发生细胞凋亡。
J Cell Biochem. 2010 May 15;110(2):468-76. doi: 10.1002/jcb.22560.
5
Genome sequence of the deep-rooted Yersinia pestis strain Angola reveals new insights into the evolution and pangenome of the plague bacterium.深根型鼠疫耶尔森菌 Angola 株基因组序列揭示了鼠疫菌进化和泛基因组的新见解。
J Bacteriol. 2010 Mar;192(6):1685-99. doi: 10.1128/JB.01518-09. Epub 2010 Jan 8.
6
Characterization of a novel and genetically different small infective variant of Piscirickettsia salmonis.一种新型且基因不同的鲑鱼立克次氏体小感染性变体的特性分析。
Microb Pathog. 2008 May;44(5):370-8. doi: 10.1016/j.micpath.2007.10.012. Epub 2007 Nov 5.
7
Roles of the regulatory proteins FlhF and FlhG in the Vibrio cholerae flagellar transcription hierarchy.调控蛋白FlhF和FlhG在霍乱弧菌鞭毛转录层级中的作用。
J Bacteriol. 2005 Sep;187(18):6324-32. doi: 10.1128/JB.187.18.6324-6332.2005.
8
Experimental vertical transmission of Piscirickettsia salmonis and in vitro study of attachment and mode of entrance into the fish ovum.
Dis Aquat Organ. 2003 Aug 15;56(1):25-30. doi: 10.3354/dao056025.
9
Design of a compartmentalized shotgun assembler for the human genome.用于人类基因组的分区鸟枪法组装器的设计
Bioinformatics. 2001;17 Suppl 1:S132-9. doi: 10.1093/bioinformatics/17.suppl_1.s132.
10
Purification of Piscirickettsia salmonis and associated phage particles.
Dis Aquat Organ. 2001 Apr 10;44(3):231-5. doi: 10.3354/dao044231.
Zotero 插件