Suppr超能文献

表征阿尔泰山阿玛拉步甲(步甲科:鞘翅目)降解标本中的DNA保存情况。

Characterizing DNA preservation in degraded specimens of Amara alpina (Carabidae: Coleoptera).

作者信息

Heintzman Peter D, Elias Scott A, Moore Karen, Paszkiewicz Konrad, Barnes Ian

机构信息

School of Biological Sciences, Royal Holloway University of London, Egham, TW20 0EX, UK.

出版信息

Mol Ecol Resour. 2014 May;14(3):606-15. doi: 10.1111/1755-0998.12205. Epub 2013 Dec 30.

Abstract

DNA preserved in degraded beetle (Coleoptera) specimens, including those derived from dry-stored museum and ancient permafrost-preserved environments, could provide a valuable resource for researchers interested in species and population histories over timescales from decades to millenia. However, the potential of these samples as genetic resources is currently unassessed. Here, using Sanger and Illumina shotgun sequence data, we explored DNA preservation in specimens of the ground beetle Amara alpina, from both museum and ancient environments. Nearly all museum specimens had amplifiable DNA, with the maximum amplifiable fragment length decreasing with age. Amplification of DNA was only possible in 45% of ancient specimens. Preserved mitochondrial DNA fragments were significantly longer than those of nuclear DNA in both museum and ancient specimens. Metagenomic characterization of extracted DNA demonstrated that parasite-derived sequences, including Wolbachia and Spiroplasma, are recoverable from museum beetle specimens. Ancient DNA extracts contained beetle DNA in amounts comparable to museum specimens. Overall, our data demonstrate that there is great potential for both museum and ancient specimens of beetles in future genetic studies, and we see no reason why this would not be the case for other orders of insect.

摘要

保存在退化甲虫(鞘翅目)标本中的DNA,包括那些来自干燥保存的博物馆标本以及古代永久冻土保存环境中的标本,对于那些对数十年到数千年时间尺度上的物种和种群历史感兴趣的研究人员而言,可能会提供一种宝贵的资源。然而,目前尚未评估这些样本作为遗传资源的潜力。在此,我们利用桑格测序法和Illumina鸟枪法测序数据,探究了来自博物馆和古代环境的高山阿玛拉步甲标本中的DNA保存情况。几乎所有博物馆标本都有可扩增的DNA,且最大可扩增片段长度随标本年代的增加而缩短。在古代标本中,只有45%的标本能够成功扩增DNA。在博物馆标本和古代标本中,保存下来的线粒体DNA片段都明显长于核DNA片段。对提取的DNA进行宏基因组学特征分析表明,包括沃尔巴克氏体和螺原体在内的寄生虫衍生序列可从博物馆甲虫标本中获得。古代DNA提取物中所含的甲虫DNA数量与博物馆标本相当。总体而言,我们的数据表明,甲虫的博物馆标本和古代标本在未来的遗传学研究中都具有巨大潜力,而且我们认为其他昆虫目标本的情况也会如此。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验