63种分枝杆菌噬菌体的全基因组序列
Complete genome sequences of 63 mycobacteriophages.
作者信息
Hatfull Graham F
机构信息
Pittsburgh Bacteriophage Institute and Department of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
出版信息
Genome Announc. 2013 Nov 27;1(6):e00847-13. doi: 10.1128/genomeA.00847-13.
Abstract
Mycobacteriophages are viruses that infect mycobacterial hosts. The current collection of sequenced mycobacteriophages-all isolated on a single host strain, Mycobacterium smegmatis mc(2)155, reveals substantial genetic diversity. The complete genome sequences of 63 newly isolated mycobacteriophages expand the resolution of our understanding of phage diversity.
摘要
分枝杆菌噬菌体是感染分枝杆菌宿主的病毒。目前已测序的分枝杆菌噬菌体文库——所有噬菌体均从单一宿主菌株耻垢分枝杆菌mc(2)155中分离得到——显示出丰富的遗传多样性。63个新分离的分枝杆菌噬菌体的全基因组序列扩展了我们对噬菌体多样性的理解分辨率。
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本文引用的文献
1
Cluster J mycobacteriophages: intron splicing in capsid and tail genes.
PLoS One. 2013 Jul 9;8(7):e69273. doi: 10.1371/journal.pone.0069273. Print 2013.
2
Analysis of novel mycobacteriophages indicates the existence of different strategies for phage inheritance in mycobacteria.
PLoS One. 2013;8(2):e56384. doi: 10.1371/journal.pone.0056384. Epub 2013 Feb 28.
3
Biology of a novel mycobacteriophage, SWU1, isolated from Chinese soil as revealed by genomic characteristics.
J Virol. 2012 Sep;86(18):10230-1. doi: 10.1128/JVI.01568-12.
4
The secret lives of mycobacteriophages.
Adv Virus Res. 2012;82:179-288. doi: 10.1016/B978-0-12-394621-8.00015-7.
5
Mycobacteriophage Marvin: a new singleton phage with an unusual genome organization.
J Virol. 2012 May;86(9):4762-75. doi: 10.1128/JVI.00075-12. Epub 2012 Feb 22.
6
Complete genome sequences of 138 mycobacteriophages.
J Virol. 2012 Feb;86(4):2382-4. doi: 10.1128/JVI.06870-11.
7
Bacteriophages and their genomes.
Curr Opin Virol. 2011 Oct;1(4):298-303. doi: 10.1016/j.coviro.2011.06.009.
8
Phamerator: a bioinformatic tool for comparative bacteriophage genomics.
BMC Bioinformatics. 2011 Oct 12;12:395. doi: 10.1186/1471-2105-12-395.
9
Gene identification in prokaryotic genomes, phages, metagenomes, and EST sequences with GeneMarkS suite.
Curr Protoc Bioinformatics. 2011 Sep;Chapter 4:4.5.1-4.5.17. doi: 10.1002/0471250953.bi0405s35.
10
Prokaryotic gene prediction using GeneMark and GeneMark.hmm.
Curr Protoc Bioinformatics. 2003 May;Chapter 4:Unit4.5. doi: 10.1002/0471250953.bi0405s01.
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