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染色体重排与 Chromothripsis:复杂染色体重排导致的快速基因组演化

Chromothripsis and beyond: rapid genome evolution from complex chromosomal rearrangements.

机构信息

Broad Institute of Harvard and Massachusetts Institute of Technology, Cambridge, Massachusetts 02142, USA;

出版信息

Genes Dev. 2013 Dec 1;27(23):2513-30. doi: 10.1101/gad.229559.113.


DOI:10.1101/gad.229559.113
PMID:24298051
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3861665/
Abstract

Recent genome sequencing studies have identified several classes of complex genomic rearrangements that appear to be derived from a single catastrophic event. These discoveries identify ways that genomes can be altered in single large jumps rather than by many incremental steps. Here we compare and contrast these phenomena and examine the evidence that they arise "all at once." We consider the impact of massive chromosomal change for the development of diseases such as cancer and for evolution more generally. Finally, we summarize current models for underlying mechanisms and discuss strategies for testing these models.

摘要

最近的基因组测序研究已经确定了几类复杂的基因组重排,这些重排似乎源自单一的灾难性事件。这些发现确定了基因组可以通过单次大跳跃而不是多次渐进步骤进行改变的方式。在这里,我们比较和对比了这些现象,并研究了它们“同时出现”的证据。我们考虑了大规模染色体变化对癌症等疾病的发展以及更广泛的进化的影响。最后,我们总结了当前的潜在机制模型,并讨论了测试这些模型的策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc90/3861665/119185517d02/2513fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc90/3861665/63edf6b090d4/2513fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc90/3861665/0c4babcda42a/2513fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc90/3861665/f7285839ddf2/2513fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc90/3861665/30258045d7d1/2513fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc90/3861665/f463f1991ab3/2513fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc90/3861665/119185517d02/2513fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc90/3861665/63edf6b090d4/2513fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc90/3861665/0c4babcda42a/2513fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc90/3861665/f7285839ddf2/2513fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc90/3861665/30258045d7d1/2513fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc90/3861665/f463f1991ab3/2513fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc90/3861665/119185517d02/2513fig6.jpg

相似文献

[1]
Chromothripsis and beyond: rapid genome evolution from complex chromosomal rearrangements.

Genes Dev. 2013-12-1

[2]
Mechanistic origins of diverse genome rearrangements in cancer.

Semin Cell Dev Biol. 2022-3

[3]
The Genomic Characteristics and Origin of Chromothripsis.

Methods Mol Biol. 2018

[4]
Catastrophic cellular events leading to complex chromosomal rearrangements in the germline.

Clin Genet. 2017-5

[5]
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[6]
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Eur J Med Genet. 2014-10

[7]
Chromoanagenesis and cancer: mechanisms and consequences of localized, complex chromosomal rearrangements.

Nat Med. 2012-11-7

[8]
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Hum Reprod. 2018-8-1

[9]
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Genes Chromosomes Cancer. 2012-7-18

[10]
Chromoanagenesis, the mechanisms of a genomic chaos.

Semin Cell Dev Biol. 2022-3

引用本文的文献

[1]
Computational Modeling of Chromoanagenesis- or Chromothripsis-Induced SNPs in Antiapoptotic Genes: Their Impact on Protein Structure and Function.

Methods Mol Biol. 2025

[2]
Structural and Mechanistic Diversity of Constitutional Chromoanagenesis.

Methods Mol Biol. 2025

[3]
Chromoanasynthesis.

Methods Mol Biol. 2025

[4]
Cancer cells' chamber of secrets: the link between micronuclei, chromothripsis and malignancy.

Open Biol. 2025-5

[5]
The tandem duplicator phenotype may be a novel targetable subgroup in pancreatic cancer.

NPJ Precis Oncol. 2025-4-4

[6]
Chromothripsis in cancer.

Nat Rev Cancer. 2025-2

[7]
Chromothripsis is a novel biomarker for prognosis and differentiation diagnosis of pancreatic neuroendocrine neoplasms.

MedComm (2020). 2024-7-10

[8]
Methods of Detection and Mechanisms of Origin of Complex Structural Genome Variations.

Methods Mol Biol. 2024

[9]
Chromothripsis is rare in IDH-mutant gliomas compared to IDH-wild-type glioblastomas whereas whole-genome duplication is equally frequent in both tumor types.

Neurooncol Adv. 2024-4-18

[10]
Evolving copy number gains promote tumor expansion and bolster mutational diversification.

Nat Commun. 2024-3-6

本文引用的文献

[1]
Modeling the evolution space of breakage fusion bridge cycles with a stochastic folding process.

J Math Biol. 2016-1

[2]
Pan-cancer patterns of somatic copy number alteration.

Nat Genet. 2013-10

[3]
Signatures of mutational processes in human cancer.

Nature. 2013-8-14

[4]
Double minute chromosomes in glioblastoma multiforme are revealed by precise reconstruction of oncogenic amplicons.

Cancer Res. 2013-8-12

[5]
The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line.

Nature. 2013-8-8

[6]
Chromothripsis under the microscope: a cytogenetic perspective of two cases of AML with catastrophic chromosome rearrangement.

Cancer Genet. 2013-6

[7]
Single-cell sequencing-based technologies will revolutionize whole-organism science.

Nat Rev Genet. 2013-7-30

[8]
Break-induced DNA replication.

Cold Spring Harb Perspect Biol. 2013-12-1

[9]
The strength of combined cytogenetic and mate-pair sequencing techniques illustrated by a germline chromothripsis rearrangement involving FOXP2.

Eur J Hum Genet. 2013-7-17

[10]
Catastrophic nuclear envelope collapse in cancer cell micronuclei.

Cell. 2013-7-3

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