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利用转座子定向插入位点测序鉴定苏云金芽孢杆菌在土壤中生存所需的基因。

Identification of genes required by Bacillus thuringiensis for survival in soil by transposon-directed insertion site sequencing.

机构信息

Detection Department, Defence Science and Technology Laboratory, Porton Down, Salisbury, Wiltshire, SP4 0JQ, UK,

出版信息

Curr Microbiol. 2014 Apr;68(4):477-85. doi: 10.1007/s00284-013-0502-7. Epub 2013 Dec 6.

DOI:10.1007/s00284-013-0502-7
PMID:24310935
Abstract

Transposon-directed insertion site sequencing was used to identify genes required by Bacillus thuringiensis to survive in non-axenic plant/soil microcosms. A total of 516 genetic loci fulfilled the criteria as conferring survival characteristics. Of these, 127 (24.6 %) were associated with uptake and transport systems; 227 loci (44.0 %) coded for enzymatic properties; 49 (9.5 %) were gene regulation or sensory loci; 40 (7.8 %) were structural proteins found in the cell envelope or had enzymatic activities related to it and 24 (4.7 %) were involved in the production of antibiotics or resistance to them. Eighty-three (16.1 %) encoded hypothetical proteins or those of unknown function. The ability to form spores was a key survival characteristic in the microcosms: bacteria, inoculated in either spore or vegetative form, were able to multiply and colonise the soil, whereas a sporulation-deficient mutant was not. The presence of grass seedlings was critical to colonisation. Bacteria labelled with green fluorescent protein were observed to adhere to plant roots. The sporulation-specific promoter of spo0A, the key regulator of sporulation, was strongly activated in the rhizosphere. In contrast, the vegetative-specific promoters of spo0A and PlcR, a pleiotropic regulator of genes with diverse activities, were only very weakly activated.

摘要

转座子导向插入位点测序被用于鉴定苏云金芽孢杆菌在非无菌植物/土壤微宇宙中生存所需的基因。共有 516 个遗传基因座符合赋予生存特征的标准。其中,127 个(24.6%)与摄取和运输系统有关;227 个基因座(44.0%)编码酶特性;49 个(9.5%)是基因调控或感觉基因座;40 个(7.8%)是存在于细胞包膜中的结构蛋白或与其具有酶活性相关的蛋白,24 个(4.7%)与抗生素的产生或对其的抗性有关。83 个(16.1%)编码假设蛋白或未知功能的蛋白。在微宇宙中,形成孢子的能力是关键的生存特征:接种在孢子或营养体形式的细菌能够繁殖并定殖土壤,而缺乏孢子形成能力的突变体则不能。草苗的存在对定殖至关重要。用绿色荧光蛋白标记的细菌被观察到附着在植物根部。孢子形成特异性启动子 spo0A 的存在,是孢子形成的关键调节因子,在根际中被强烈激活。相比之下,spooA 和 PlcR 的营养体特异性启动子(多效调节因子,调节具有多种活性的基因)仅被非常弱地激活。

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