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季铵盐型甜菜碱与聚(乙二醇)修饰剂改变疏水相互作用的差异:分子模拟研究。

Difference of carboxybetaine and oligo(ethylene glycol) moieties in altering hydrophobic interactions: a molecular simulation study.

机构信息

Department of Chemical Engineering, University of Washington , Seattle, Washington 98195, United States.

出版信息

J Phys Chem B. 2014 Jan 9;118(1):189-94. doi: 10.1021/jp410224w. Epub 2013 Dec 20.

Abstract

Polycarboxybetaine and poly(ethylene glycol) materials resist nonspecific protein adsorption but differ in influencing biological functions such as enzymatic activity. To investigate this difference, we studied the influence of carboxybetaine and oligo(ethylene glycol) moieties on hydrophobic interactions using molecular simulations. We employed a model system composed of two non-polar plates and studied the potential of mean force of plate-plate association in carboxybetaine, (ethylene glycol)4, and (ethylene glycol)2 solutions using well-tempered metadynamics simulations. Water, trimethylamine N-oxide, and urea solutions were used as reference systems. We analyzed the variation of the potential of mean force in various solutions to study how carboxybetaine and oligo(ethylene glycol) moieties influence the hydrophobic interactions. To study the origin of their influence, we analyzed the normalized distributions of moieties and water molecules using molecular dynamics simulations. The simulation results showed that oligo(ethylene glycol) moieties repel water molecules away from the non-polar plates and weaken the hydrophobic interactions. Carboxybetaine moieties do not repel water molecules away from the plates and therefore do not influence the hydrophobic interactions.

摘要

聚羧酸甜菜碱和聚乙二醇材料能抵抗非特异性蛋白质吸附,但在影响酶活性等生物功能方面存在差异。为了研究这种差异,我们使用分子模拟研究了甜菜碱和低聚乙二醇基团对疏水性相互作用的影响。我们采用由两个非极性板组成的模型系统,使用经过良好调谐的元动力学模拟研究了在甜菜碱、(乙二醇)4 和(乙二醇)2 溶液中板-板缔合的平均势力。水、三甲基氧化胺和脲溶液被用作参考系统。我们分析了在各种溶液中平均势力的变化,以研究甜菜碱和低聚乙二醇基团如何影响疏水性相互作用。为了研究它们影响的起源,我们使用分子动力学模拟分析了基团和水分子的归一化分布。模拟结果表明,低聚乙二醇基团排斥水分子远离非极性板并削弱疏水性相互作用。甜菜碱基团不会将水分子排斥到板外,因此不会影响疏水性相互作用。

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