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理论 57Fe Mössbauer 光谱学在[Fe]氢化酶活性中心中间体结构阐明中的应用。

Theoretical 57Fe Mössbauer spectroscopy for structure elucidation of [Fe] hydrogenase active site intermediates.

机构信息

Laboratorium für Physikalische Chemie, ETH Zürich , Wolfgang-Pauli-Strasse 10 8093 Zürich, Switzerland.

出版信息

Inorg Chem. 2013 Dec 16;52(24):14205-15. doi: 10.1021/ic4021349. Epub 2013 Nov 20.

DOI:10.1021/ic4021349
PMID:24328345
Abstract

[Fe] hydrogenase is a hydrogen activating enzyme that features a monoiron active site, which can be well characterized by Mössbauer spectroscopy. Mössbauer spectra have been measured of the CO and CN(-) inhibited species as well as under turnover conditions [Shima, S. et al., J. Am. Chem. Soc., 2005, 127, 10430]. This study presents calculated Mössbauer parameters for various active-site models of [Fe] hydrogenase to provide structural information about the species observed in experiment. Because theoretical Mössbauer spectroscopy requires the parametrization of observables from first-principles calculations (i.e., electric-field gradients and contact densities) to the experimental observables (i.e., quadrupole splittings and isomer shifts), nonrelativistic and relativistic density functional theory methods are parametrized against a reference set of Fe complexes specifically selected for the application to the Fe center in [Fe] hydrogenase. With this methodology, the measured parameters for the CO and CN(-) inhibited complexes can be reproduced. Evidence for the protonation states of the hydroxyl group in close proximity to the active site and for the thiolate ligand, which could participate in proton transfer, is obtained. The unknown resting state measured in the presence of the substrate and under pure H2 atmosphere is identified to be a water-coordinated complex. Consistent with previous assignments based on infrared and X-ray absorption near-edge spectroscopy, all measured Mössbauer data can be reproduced with the active site's iron atom being in oxidation state +2.

摘要

[Fe]氢化酶是一种激活氢气的酶,具有单铁活性位点,可以通过穆斯堡尔光谱很好地进行特征描述。已经测量了 CO 和 CN(-)抑制物种以及在周转条件下[Shima,S.等人,美国化学学会杂志,2005 年,127,10430]的穆斯堡尔光谱。本研究提出了各种[Fe]氢化酶活性位点模型的计算穆斯堡尔参数,为实验中观察到的物种提供结构信息。由于理论穆斯堡尔光谱需要将可观测值从第一性原理计算(即电场梯度和接触密度)参数化到实验可观测值(即四极分裂和等位移),因此非相对论和相对论密度泛函理论方法针对专门选择的一组 Fe 配合物进行参数化,这些配合物特别适用于 [Fe]氢化酶中 Fe 中心的应用。使用这种方法,可以再现 CO 和 CN(-)抑制复合物的测量参数。获得了与活性位点附近的羟基和可能参与质子转移的硫醇配体的质子化状态有关的证据。在底物存在下和在纯 H2 气氛中测量的未知静止状态被确定为配位水的复合物。与基于红外和 X 射线吸收近边光谱的先前分配一致,所有测量的穆斯堡尔数据都可以用活性位点的铁原子处于+2 氧化态来重现。

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