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并行动力学蒙特卡罗模拟框架,纳入了吸附剂横向相互作用的精确模型。

Parallel kinetic Monte Carlo simulation framework incorporating accurate models of adsorbate lateral interactions.

机构信息

Research Software Development Team, Research IT Services, University College London, Torrington Place, London WC1E 6BT, United Kingdom.

Department of Chemical Engineering, University College London, Torrington Place, London WC1E 7JE, United Kingdom.

出版信息

J Chem Phys. 2013 Dec 14;139(22):224706. doi: 10.1063/1.4840395.

Abstract

Ab initio kinetic Monte Carlo (KMC) simulations have been successfully applied for over two decades to elucidate the underlying physico-chemical phenomena on the surfaces of heterogeneous catalysts. These simulations necessitate detailed knowledge of the kinetics of elementary reactions constituting the reaction mechanism, and the energetics of the species participating in the chemistry. The information about the energetics is encoded in the formation energies of gas and surface-bound species, and the lateral interactions between adsorbates on the catalytic surface, which can be modeled at different levels of detail. The majority of previous works accounted for only pairwise-additive first nearest-neighbor interactions. More recently, cluster-expansion Hamiltonians incorporating long-range interactions and many-body terms have been used for detailed estimations of catalytic rate [C. Wu, D. J. Schmidt, C. Wolverton, and W. F. Schneider, J. Catal. 286, 88 (2012)]. In view of the increasing interest in accurate predictions of catalytic performance, there is a need for general-purpose KMC approaches incorporating detailed cluster expansion models for the adlayer energetics. We have addressed this need by building on the previously introduced graph-theoretical KMC framework, and we have developed Zacros, a FORTRAN2003 KMC package for simulating catalytic chemistries. To tackle the high computational cost in the presence of long-range interactions we introduce parallelization with OpenMP. We further benchmark our framework by simulating a KMC analogue of the NO oxidation system established by Schneider and co-workers [J. Catal. 286, 88 (2012)]. We show that taking into account only first nearest-neighbor interactions may lead to large errors in the prediction of the catalytic rate, whereas for accurate estimates thereof, one needs to include long-range terms in the cluster expansion.

摘要

从头算动力学蒙特卡罗(KMC)模拟方法成功应用于阐明非均相催化剂表面的物理化学现象已有二十多年。这些模拟需要对构成反应机制的基本反应动力学以及参与化学反应的物种的热力学有详细的了解。有关热力学的信息编码在气体和表面结合物种的形成能以及催化表面上吸附物之间的横向相互作用中,这些可以在不同的细节水平上进行建模。以前的大多数工作只考虑了成对加性的最近邻相互作用。最近,使用包含长程相互作用和多体项的簇展开哈密顿量来对催化速率进行详细估计[C. Wu, D. J. Schmidt, C. Wolverton, and W. F. Schneider, J. Catal. 286, 88 (2012)]。鉴于对催化性能的准确预测越来越感兴趣,因此需要一种通用的 KMC 方法,该方法包含用于吸附层热力学的详细簇展开模型。我们通过构建以前介绍的图论 KMC 框架来满足这一需求,并且我们开发了 Zacros,这是一个用于模拟催化化学的 FORTRAN2003 KMC 包。为了解决存在长程相互作用时的高计算成本问题,我们引入了 OpenMP 并行化。我们通过模拟 Schneider 及其同事建立的 NO 氧化系统的 KMC 模拟来进一步验证我们的框架[J. Catal. 286, 88 (2012)]。我们表明,仅考虑最近邻相互作用可能会导致对催化速率的预测产生较大误差,而要进行准确的估计,则需要在簇展开中包含长程项。

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